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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Storici, P."

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Search Summary

This query matches 61 Structures.

Refinements

Structure Determination Methodology

experimental (61)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (28)
	Homo sapiens (26)
	Sus scrofa (3)
	Citrobacter freundii (1)
	Escherichia coli (1)
	Malus domestica (1)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (1)

Taxonomy

	Eukaryota (30)
	Riboviria (28)
	Bacteria (3)

Experimental Method

X-RAY DIFFRACTION (61)

Polymer Entity Type

Protein (61)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (29)
	2.0 - 2.5 (16)
	2.5 - 3.0 (9)
	3.0 - 3.5 (2)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (4)
	2005 - 2009 (4)
	2010 - 2014 (1)
	2015 - 2019 (5)
	2020 - 2024 (46)

Enzyme Classification Name

	Transferases (29)
	Hydrolases (29)
	Lyases (2)
	Oxidoreductases (1)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)

Symmetry Type

	Cyclic (39)
	Asymmetric (22)
	Dihedral (1)

SCOP Classification

	All beta proteins (11)
	Alpha and beta proteins (a/b) (6)
	Alpha and beta proteins (a+b) (7)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 61 Structures

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1B8G \| pdb_00001b8g	Download File View File

1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE

Capitani, G., Hohenester, E., Feng, L., Storici, P., Kirsch, J.F., Jansonius, J.N.

(1999) J Mol Biology 294: 745-756

Released	2000-01-26
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Malus domestica
Macromolecule	PROTEIN (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE) (protein)
Unique Ligands	PLP

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1OHV \| pdb_00001ohv	Download File View File

4-AMINOBUTYRATE-AMINOTRANSFERASE FROM PIG

Storici, P., Schirmer, T.

(2004) J Biological Chem 279: 363

Released	2003-10-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Sus scrofa
Macromolecule	4-AMINOBUTYRATE AMINOTRANSFERASE (protein)
Unique Ligands	ACT, FES, PLP

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1OHW \| pdb_00001ohw	Download File View File

4-AMINOBUTYRATE-AMINOTRANSFERASE inactivated by gamma-vinyl GABA

Storici, P., Schirmer, T.

(2004) J Biological Chem 279: 363

Released	2003-10-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Sus scrofa
Macromolecule	4-AMINOBUTYRATE AMINOTRANSFERASE (protein)
Unique Ligands	FES, PLP, VIG

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1OHY \| pdb_00001ohy	Download File View File

4-AMINOBUTYRATE-AMINOTRANSFERASE inactivated by gamma-ethynyl GABA

Storici, P., Schirmer, T.

(2004) J Biological Chem 279: 363

Released	2003-10-16
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Sus scrofa
Macromolecule	4-AMINOBUTYRATE AMINOTRANSFERASE (protein)
Unique Ligands	FES, GEG, PLP

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2BMC \| pdb_00002bmc	Download File View File

Aurora-2 T287D T288D complexed with PHA-680632

Cameron, A.D., Izzo, G., Sagliano, A., Rusconi, L., Storici, P., Fancelli, D., Berta, D., Bindi, S., Catana, C., Forte, B., Giordano, P., Mantegani, S., Meroni, M., Moll, J., Pittala, V., Severino, D., Tonani, R., Varasi, M., Vulpetti, A., Vianello, P.

(2005) J Med Chem 48: 3080

Released	2005-03-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	SERINE THREONINE-PROTEIN KINASE 6 (protein)
Unique Ligands	MPY

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2J1N \| pdb_00002j1n	Download File View File

osmoporin OmpC

Basle, A., Storici, P., Rummel, G., Rosenbusch, J.P., Schirmer, T.

(2006) J Mol Biology 362: 933

Released	2006-09-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	OUTER MEMBRANE PROTEIN C (protein)
Unique Ligands	CL, D12, MG

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2J4Z \| pdb_00002j4z	Download File View File

Structure of Aurora-2 in complex with PHA-680626

Cameron, A.D., Izzo, G., Storici, P., Rusconi, L., Fancelli, D., Varasi, M., Berta, D., Bindi, S., Forte, B., Severino, D., Tonani, R., Vianello, P.

(2006) J Med Chem 49: 7247-7251

Released	2006-11-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	SERINE THREONINE-PROTEIN KINASE 6 (protein)
Unique Ligands	626, ARS

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2J50 \| pdb_00002j50	Download File View File

Structure of Aurora-2 in complex with PHA-739358

Cameron, A.D., Izzo, G., Storici, P., Rusconi, L., Fancelli, D., Varasi, M., Berta, D., Bindi, S., Forte, B., Severino, D., Tonani, R., Vianello, P.

(2006) J Med Chem 49: 7247

Released	2006-11-06
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE-PROTEIN KINASE 6 (protein)
Unique Ligands	627, SO4

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2OAT \| pdb_00002oat	Download File View File

ORNITHINE AMINOTRANSFERASE COMPLEXED WITH 5-FLUOROMETHYLORNITHINE

Storici, P., Schirmer, T.

(1999) J Mol Biology 285: 297-309

Released	1998-12-09
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	ORNITHINE AMINOTRANSFERASE (protein)
Unique Ligands	PFM

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2XRU \| pdb_00002xru	Download File View File

AURORA-A T288E COMPLEXED WITH PHA-828300

Bindi, S., Fancelli, D., Alli, C., Berta, D., Bertrand, J.A., Cameron, A.D., Cappella, P., Carpinelli, P., Cervi, G., Croci, W., D'Anello, M., Forte, B., LauraGiorgini, M., Marsiglio, A., Moll, J., Pesenti, E., Pittala, V., Pulici, M., Riccardi-Sirtori, F., Roletto, F., Soncini, C., Storici, P., Varasi, M., Volpi, D., Zugnoni, P., Vianello, P.

(2010) Bioorg Med Chem 18: 7113

Released	2010-09-29
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE-PROTEIN KINASE 6 (protein)
Unique Ligands	400

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6EGR \| pdb_00006egr	Download File View File

Crystal structure of Citrobacter freundii methionine gamma-lyase with V358Y replacement

Revtovich, S.V., Demitri, N., Raboni, S., Nikulin, A.D., Morozova, E.A., Demidkina, T.V., Storici, P., Mozzarelli, A.

(2018) Biochim Biophys Acta Proteins Proteom 1866: 1260-1270

Released	2018-10-10
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Citrobacter freundii
Macromolecule	Methionine gamma-lyase (protein)
Unique Ligands	PEG, PGE, PLP

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6H0U \| pdb_00006h0u	Download File View File

Glycogen synthase kinase-3 beta (GSK3) complex with a covalent [1,2,4]triazolo[1,5-a][1,3,5]triazine inhibitor

Marcovich, I., Demitri, N., De Zorzi, R., Storici, P.

(2019) ChemMedChem 14: 310-314

Released	2019-05-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Glycogen synthase kinase-3 beta (protein)
Unique Ligands	CL, FKB, GOL, MLI, NA

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6HK3 \| pdb_00006hk3	Download File View File

Crystal structure of GSK-3B in complex with pyrazine inhibitor C44

Piretti, V., Giabbai, B., Demitri, N., Di Martino, R., Tripathi, S.K., Gobbo, D., Decherchi, S., Storici, P., Girotto, S., Cavalli, A.

(2019) J Chem Theory Comput 15: 4646-4659

Released	2019-07-17
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	GLY-SER-HIS-GLY-HIS-HIS-HIS-HIS (protein) Glycogen synthase kinase-3 beta (protein)
Unique Ligands	CL, DMS, G8B, GOL, MLI

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6HK4 \| pdb_00006hk4	Download File View File

Crystal structure of GSK-3B in complex with pyrazine inhibitor C22

Piretti, V., Giabbai, B., Demitri, N., Di Martino, R., Tripathi, S.K., Gobbo, D., Decherchi, S., Storici, P., Girotto, S., Cavalli, A.

(2019) J Chem Theory Comput 15: 4646-4659

Released	2019-07-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	GLY-SER-HIS-GLY-HIS-HIS-HIS-HIS-HIS (protein) Glycogen synthase kinase-3 beta (protein)
Unique Ligands	DMS, G8E, GOL, MLI

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6HK7 \| pdb_00006hk7	Download File View File

Crystal structure of GSK-3B in complex with pyrazine inhibitor C50

Piretti, V., Giabbai, B., Demitri, N., Di Martino, R., Tripathi, S.K., Gobbo, D., Decherchi, S., Storici, P., Girotto, S., Cavalli, A.

(2019) J Chem Theory Comput 15: 4646-4659

Released	2019-07-17
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Glycogen synthase kinase-3 beta (protein)
Unique Ligands	DMS, G8N, GOL

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6Z4N \| pdb_00006z4n	Download File View File

CRYSTAL STRUCTURE OF OASS COMPLEXED WITH UPAR INHIBITOR

Demitri, N., Storici, P., Campanini, B.

(2021) ACS Infect Dis 7: 281-292

Released	2021-04-07
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Cysteine synthase A (protein)
Unique Ligands	CO, DMS, GOL, PLP, Q7B

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7ALH \| pdb_00007alh	Download File View File

Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 at 1.65A resolution (spacegroup C2).

Costanzi, E., Demitri, N., Giabbai, B., Heroux, A., Storici, P.

(2021) Int J Mol Sci 22:

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)

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7ALI \| pdb_00007ali	Download File View File

Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 at 1.65A resolution (spacegroup P2(1)).

Costanzi, E., Demitri, N., Giabbai, B., Heroux, A., Storici, P.

(2021) Int J Mol Sci 22:

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)

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7B3E \| pdb_00007b3e	Download File View File

Crystal structure of myricetin covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

(2021) Acs Pharmacol Transl Sci 4: 1096-1110

Released	2021-01-13
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Main Protease (protein)
Unique Ligands	CL, EDO, MYC, NA

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7BB2 \| pdb_00007bb2	Download File View File

Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 at 1.6A resolution (spacegroup P2(1)2(1)2(1))

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

(2021) Int J Mol Sci 22:

Released	2021-03-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	CL, EDO, NA

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7BE7 \| pdb_00007be7	Download File View File

Crystal structure of MG-132 covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2.

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

(2021) Int J Mol Sci 22:

Released	2021-03-03
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ALD, CL, EDO, NA, PEG

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7BFB \| pdb_00007bfb	Download File View File

Crystal structure of ebselen covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2.

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

To be published

Released	2021-03-03
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Main Protease (protein)
Unique Ligands	9JT, EDO, NA

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7BGP \| pdb_00007bgp	Download File View File

Crystal structure of MG-132 covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2 in absence of DTT.

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

(2021) Int J Mol Sci 22:

Released	2021-03-03
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ALD, CL, EDO, NA

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7NBY \| pdb_00007nby	Download File View File

Crystal structure of SU3327 (halicin) covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2.

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

To be published

Released	2021-03-03
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Main Protease (protein)
Unique Ligands	CL, NA, NO3, SO4, U88

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7NF5 \| pdb_00007nf5	Download File View File

Crystal structure of MG-132 covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2 in spacegroup C2.

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

(2021) Int J Mol Sci 22:

Released	2021-04-07
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ALD, CL, EDO, IPA, NA

1 to 25 of 61 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1B8G | pdb_00001b8g

1OHV | pdb_00001ohv

1OHW | pdb_00001ohw

1OHY | pdb_00001ohy

2BMC | pdb_00002bmc

2J1N | pdb_00002j1n

2J4Z | pdb_00002j4z

2J50 | pdb_00002j50

2OAT | pdb_00002oat

2XRU | pdb_00002xru

6EGR | pdb_00006egr

6H0U | pdb_00006h0u

6HK3 | pdb_00006hk3

6HK4 | pdb_00006hk4

6HK7 | pdb_00006hk7

6Z4N | pdb_00006z4n

7ALH | pdb_00007alh

7ALI | pdb_00007ali

7B3E | pdb_00007b3e

7BB2 | pdb_00007bb2

7BE7 | pdb_00007be7

7BFB | pdb_00007bfb

7BGP | pdb_00007bgp

7NBY | pdb_00007nby

7NF5 | pdb_00007nf5