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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Staker, B.L."

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Search Summary

This query matches 48 Structures.

Refinements

Structure Determination Methodology

experimental (48)

Scientific Name of Source Organism

	Homo sapiens (23)
	Plasmodium vivax Sal-1 (4)
	Burkholderia pseudomallei (3)
	Cryptosporidium parvum Iowa II (3)
	Escherichia coli (3)
	Bartonella henselae (2)
	Mycolicibacterium smegmatis MC2 155 (2)
	Babesia bovis T2Bo (1)
	Brucella suis (1)
	Burkholderia pseudomallei 1710b (1)

More...

Taxonomy

	Eukaryota (32)
	Bacteria (15)
	Riboviria (1)

Experimental Method

X-RAY DIFFRACTION (48)

Polymer Entity Type

	Protein (48)
	DNA (8)

Refinement Resolution (Å)

	1.5 - 2.0 (15)
	2.0 - 2.5 (19)
	2.5 - 3.0 (9)
	3.0 - 3.5 (5)

Release Date

	2000 - 2004 (7)
	2005 - 2009 (14)
	2010 - 2014 (18)
	2015 - 2019 (2)
	2020 - 2024 (7)

Enzyme Classification Name

	Transferases (18)
	Hydrolases (10)
	Isomerases (8)
	Lyases (4)
	Oxidoreductases (4)

Symmetry Type

	Asymmetric (35)
	Cyclic (10)
	Dihedral (7)

SCOP Classification

	Alpha and beta proteins (a+b) (22)
	All alpha proteins (11)
	Alpha and beta proteins (a/b) (7)
	Artifacts (9)
	Multi-domain proteins (alpha and beta) (8)
	All beta proteins (1)

AllSelected

1 to 25 of 48 Structures

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1DM9 \| pdb_00001dm9	Download File View File

HEAT SHOCK PROTEIN 15 KD

Staker, B.L., Korber, P., Bardwell, J.C.A., Saper, M.A.

(2000) EMBO J 19: 749-757

Released	2000-02-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	HYPOTHETICAL 15.5 KD PROTEIN IN MRCA-PCKA INTERGENIC REGION (protein)
Unique Ligands	SO4

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1EIZ \| pdb_00001eiz	Download File View File

FTSJ RNA METHYLTRANSFERASE COMPLEXED WITH S-ADENOSYLMETHIONINE

Bugl, H., Fauman, E.B., Staker, B.L., Zheng, F., Kushner, S.R., Saper, M.A., Bardwell, J.C.A., Jakob, U.

(2000) Mol Cell 6: 349-360

Released	2000-08-30
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	FTSJ (protein)
Unique Ligands	SAM

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1EJ0 \| pdb_00001ej0	Download File View File

FTSJ RNA METHYLTRANSFERASE COMPLEXED WITH S-ADENOSYLMETHIONINE, MERCURY DERIVATIVE

Bugl, H., Fauman, E.B., Staker, B.L., Zheng, F., Kushner, S.R., Saper, M.A., Bardwell, J.C.A., Jakob, U.

(2000) Mol Cell 6: 349-360

Released	2000-08-30
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli
Macromolecule	FTSJ (protein)
Unique Ligands	HG, SAM

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1K4S \| pdb_00001k4s	Download File View File

HUMAN DNA TOPOISOMERASE I IN COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX

Staker, B.L., Hjerrild, K., Feese, M.D., Behnke, C.A., Burgin Jr., A.B., Stewart, L.J.

(2002) Proc Natl Acad Sci U S A 99: 15387-15392

Released	2002-12-04
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D((SPT)PGPAPAPAPAPAP(5IU)P(5IU)P(5IU)P(5IU)PT)-3' (nucleic acid) 5'-D(APAPAPAPAPGPAPCP(5IU)P(5IU))-3' (nucleic acid) 5'-D(APAPAPAPAPTP(IDO)UP(IDO)UP(IDO)UP(IDO)UPCPAPAPAPGP(IDO)UPCP(IDO)UP(IDO)UP(IDO)UP(IDO)UPT)-3' (nucleic acid)

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1K4T \| pdb_00001k4t	Download File View File

HUMAN DNA TOPOISOMERASE I (70 KDA) IN COMPLEX WITH THE POISON TOPOTECAN AND COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX

Staker, B.L., Hjerrild, K., Feese, M.D., Behnke, C.A., Burgin Jr., A.B., Stewart, L.J.

(2002) Proc Natl Acad Sci U S A 99: 15387-15392

Released	2002-12-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D((TGP)PGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPGPAPCPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPCPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	HG, PG4, TTC, TTG

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1RR8 \| pdb_00001rr8	Download File View File

Structural Mechanisms of Camptothecin Resistance by Mutations in Human Topoisomerase I

Chrencik, J.E., Staker, B.L., Burgin, A.B., Stewart, L., Redinbo, M.R.

(2004) J Mol Biology 339: 773-784

Released	2004-07-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D(APAPAPAPAPGPAPCPTPTGPGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPCPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	TTC, TTG

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1RRJ \| pdb_00001rrj	Download File View File

Structural Mechanisms of Camptothecin Resistance by Mutations in Human Topoisomerase I

Chrencik, J.E., Staker, B.L., Burgin, A.B., Stewart, L., Redinbo, M.R.

(2004) J Mol Biology 339: 773-784

Released	2004-07-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D(APAPAPAPAPGPAPCPTPTGPGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPCPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	TTC, TTG

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1SC7 \| pdb_00001sc7	Download File View File

Human DNA Topoisomerase I (70 Kda) In Complex With The Indenoisoquinoline MJ-II-38 and Covalent Complex With A 22 Base Pair DNA Duplex

Staker, B.L., Feese, M.D., Cushman, M., Pommier, Y., Zembower, D., Stewart, L., Burgin, A.B.

(2005) J Med Chem 48: 2336-2345

Released	2005-04-19
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D((TGP)PGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPGPAPCPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPCPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	M38, PG4

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1SEU \| pdb_00001seu	Download File View File

Human DNA Topoisomerase I (70 Kda) In Complex With The Indolocarbazole SA315F and Covalent Complex With A 22 Base Pair DNA Duplex

Staker, B.L., Feese, M.D., Cushman, M., Pommier, Y., Zembower, D., Stewart, L., Burgin, A.B.

(2005) J Med Chem 48: 2336-2345

Released	2005-04-19
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D((TGP)PGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPGPAPCPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPCPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	SA3

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1T8I \| pdb_00001t8i	Download File View File

Human DNA Topoisomerase I (70 Kda) In Complex With The Poison Camptothecin and Covalent Complex With A 22 Base Pair DNA Duplex

Staker, B.L., Feese, M.D., Cushman, M., Pommier, Y., Zembower, D., Stewart, L., Burgin, A.B.

(2005) J Med Chem 48: 2336-2345

Released	2005-05-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D((TGP)PGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPGPAPCPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPCPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	EHD

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1TL8 \| pdb_00001tl8	Download File View File

Human DNA topoisomerase I (70 kDa) in complex with the indenoisoquinoline AI-III-52 and covalent complex with a 22 base pair DNA duplex

Ioanoviciu, A., Antony, S., Pommier, Y., Staker, B.L., Stewart, L., Cushman, M.

(2005) J Med Chem 48: 4803-4814

Released	2005-06-21
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase I (protein) 5'-D((TPC)PGPAPAPAPAPAPTPTPTPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPGPAPCPTPT)-3' (nucleic acid) 5'-D(APAPAPAPAPTPTPTPTPTPCPGPAPAPGPTPCPTPTPTPTPT)-3' (nucleic acid)
Unique Ligands	AI3

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3BL7 \| pdb_00003bl7	Download File View File

Synthetic Gene Encoded DcpS bound to inhibitor DG156844

Staker, B.L., Christensen, J., Stewart, L., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D)

(2008) ACS Chem Biol 3: 711-722

Released	2008-10-21
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens
Macromolecule	Scavenger mRNA-decapping enzyme DcpS (protein)
Unique Ligands	DD1

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3BL9 \| pdb_00003bl9	Download File View File

Synthetic Gene Encoded DcpS bound to inhibitor DG157493

Staker, B.L., Christensen, J., Stewart, L., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D)

(2008) ACS Chem Biol 3: 711-722

Released	2008-10-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Scavenger mRNA-decapping enzyme DcpS (protein)
Unique Ligands	DD2

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3BLA \| pdb_00003bla	Download File View File

Synthetic Gene Encoded DcpS bound to inhibitor DG153249

Staker, B.L., Christensen, J., Stewart, L., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D)

(2008) ACS Chem Biol 3: 711-722

Released	2008-10-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Scavenger mRNA-decapping enzyme DcpS (protein)
Unique Ligands	DD3

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3G45 \| pdb_00003g45	Download File View File

Crystal structure of human phosphodiesterase 4b with regulatory domain and d155988

Staker, B.L.

(2010) Nat Biotechnol 28: 63-70

Released	2010-01-19
Method	X-RAY DIFFRACTION 2.63 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4B (protein)
Unique Ligands	988, MG, ZN

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3G4G \| pdb_00003g4g	Download File View File

Crystal structure of human phosphodiesterase 4d with regulatory domain and d155871

Staker, B.L.

(2010) Nat Biotechnol 28: 63-70

Released	2010-01-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (protein)
Unique Ligands	CA, D71, MG, ZN

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3G4I \| pdb_00003g4i	Download File View File

Crystal structure of human phosphodiesterase 4d with d155871

Staker, B.L.

(2010) Nat Biotechnol 28: 63-70

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (protein)
Unique Ligands	D71, EOH, MG, SO4, ZN

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3G4K \| pdb_00003g4k	Download File View File

Crystal structure of human phosphodiesterase 4d with rolipram

Staker, B.L.

(2010) Nat Biotechnol 28: 63-70

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (protein)
Unique Ligands	EDO, MG, ROL, SO4, ZN

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3G4L \| pdb_00003g4l	Download File View File

Crystal structure of human phosphodiesterase 4d with roflumilast

Staker, B.L.

(2010) Nat Biotechnol 28: 63-70

Released	2010-01-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (protein)
Unique Ligands	EDO, MG, ROF, SO4, ZN

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3G58 \| pdb_00003g58	Download File View File

Crystal structure of human phosphodiesterase 4d with d155988/pmnpq

Staker, B.L.

(2010) Nat Biotechnol 28: 63-70

Released	2010-01-19
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (protein)
Unique Ligands	988, EDO, MG, SO4, ZN

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3GMT \| pdb_00003gmt	Download File View File

Crystal structure of adenylate kinase from burkholderia pseudomallei

Abendroth, J., Staker, B.L., Robinson, H., Buchko, G.W., Hewitt, S.N., Napuli, A.J., Van Voorhis, W., Stacy, R., Myler, P.J., Stewart, L., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2010) Biochem Biophys Res Commun 394: 1012-1017

Released	2009-06-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Adenylate kinase (protein)
Unique Ligands	SO4

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3HZG \| pdb_00003hzg	Download File View File

Crystal structure of mycobacterium tuberculosis thymidylate synthase X bound with FAD

Staker, B.L., Rathod, P., Hunter, J., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2015) Tuberculosis (Edinb) 95: 142-148

Released	2009-07-07
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Thymidylate synthase thyX (protein)
Unique Ligands	FAD, GOL, PO4

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3I4E \| pdb_00003i4e	Download File View File

Crystal structure of Isocitrate Lyase from Burkholderia pseudomallei

Staker, B.L., Arakaki, T., Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2009-07-14
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Burkholderia pseudomallei
Macromolecule	Isocitrate lyase (protein)

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3IAD \| pdb_00003iad	Download File View File

Crystal structure of human phosphodiesterase 4D with bound allosteric modulator

Staker, B.L., Burgin Jr., A.B.

(2010) Nat Biotechnol 28: 63-70

Released	2010-01-05
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (protein)
Unique Ligands	15X, EPE, MG, ZN