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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Schiffer, C.A."

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Search Summary

This query matches 395 Structures.

Refinements

Structure Determination Methodology

experimental (395)

Scientific Name of Source Organism

	Human immunodeficiency virus 1 (198)
	Hepacivirus hominis (56)
	Severe acute respiratory syndrome coronavirus 2 (35)
	HIV-1 M:B_ARV2/SF2 (30)
	hepatitis C virus genotype 1a (27)
	Homo sapiens (21)
	Human immunodeficiency virus type 1 (BRU ISOLATE) (12)
	Hepatitis C virus (isolate 1) (8)
	enterovirus D68 (6)
	Influenza A virus (4)

More...

Taxonomy

	Riboviria (376)
	Eukaryota (22)
	Riboviria (RNA viruses and viroids) (11)
	other sequences (2)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (394)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (395)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (19)
	1.5 - 2.0 (263)
	2.0 - 2.5 (92)
	2.5 - 3.0 (15)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)

Release Date

	2000 - 2004 (16)
	2005 - 2009 (37)
	2010 - 2014 (89)
	2015 - 2019 (72)
	2020 - 2024 (175)
	2025 - 2029 (6)

Enzyme Classification Name

	Hydrolases (177)
	Transferases (7)
	Oxidoreductases (4)
	Ligases (1)

Symmetry Type

	Cyclic (255)
	Asymmetric (143)
	Dihedral (2)

SCOP Classification

	All beta proteins (217)
	Artifacts (57)
	Alpha and beta proteins (a/b) (9)
	Alpha and beta proteins (a+b) (3)
	All alpha proteins (1)

AllSelected

1 to 25 of 395 Structures

Page 1 of 16

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1F7A \| pdb_00001f7a	Download File View File

HOW DOES A SYMMETRIC DIMER RECOGNIZE AN ASYMMETRIC SUBSTRATE? A SUBSTRATE COMPLEX OF HIV-1 PROTEASE.

Schiffer, C.A.

(2000) J Mol Biology 301: 1207-1220

Released	2001-06-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	HIV-1 CRF04_cpx Human immunodeficiency virus 1
Macromolecule	CA-P2 SUBSTRATE (protein) POL POLYPROTEIN (protein)
Unique Ligands	ACT

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1K6C \| pdb_00001k6c	Download File View File

LACK OF SYNERGY FOR INHIBITORS TARGETING A MULTI-DRUG RESISTANT HIV-1 PROTEASE

Schiffer, C.A.

(2002) Protein Sci 11: 418-429

Released	2002-02-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein (protein)
Unique Ligands	ACT, MK1

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1K6P \| pdb_00001k6p	Download File View File

LACK OF SYNERGY FOR INHIBITORS TARGETING A MULTI-DRUG RESISTANT HIV-1 PROTEASE

Schiffer, C.A.

(2002) Protein Sci 11: 418-429

Released	2002-02-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein (protein)
Unique Ligands	ACT, XN3

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1K6T \| pdb_00001k6t	Download File View File

LACK OF SYNERGY FOR INHIBITORS TARGETING A MULTI-DRUG RESISTANT HIV-1 PROTEASE

Schiffer, C.A.

(2002) Protein Sci 11: 418-429

Released	2002-02-06
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein (protein)
Unique Ligands	ACT, XN1

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1K6V \| pdb_00001k6v	Download File View File

LACK OF SYNERGY FOR INHIBITORS TARGETING A MULTI-DRUG RESISTANT HIV-1 PROTEASE

Schiffer, C.A.

(2002) Protein Sci 11: 418-429

Released	2002-02-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein (protein)
Unique Ligands	ACT, XN2

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1KF9 \| pdb_00001kf9	Download File View File

PHAGE DISPLAY DERIVED VARIANT OF HUMAN GROWTH HORMONE COMPLEXED WITH TWO COPIES OF THE EXTRACELLULAR DOMAIN OF ITS RECEPTOR

Schiffer, C.A., Ultsch, M., Walsh, S., Somers, W., De Vos, A.M., Kossiakoff, A.A.

(2002) J Mol Biology 316: 277-289

Released	2002-11-20
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	EXTRACELLULAR DOMAIN HUMAN GROWTH HORMONE RECEPTOR (1-238) (protein) PHAGE DISPLAY DERIVED VARIANT HUMAN GROWTH HORMONE (protein)

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1KJ4 \| pdb_00001kj4	Download File View File

SUBSTRATE SHAPE DETERMINES SPECIFICITY OF RECOGNITION RECOGNITION FOR HIV-1 PROTEASE: ANALYSIS OF CRYSTAL STRUCTURES OF SIX SUBSTRATE COMPLEXES

Schiffer, C.A.

(2002) Structure 10: 369-381

Released	2002-03-06
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human immunodeficiency virus 1 Human immunodeficiency virus type 1 group M subtype B (isolate JRCSF)
Macromolecule	POL polyprotein (protein) gag polyprotein (protein)
Unique Ligands	ACT

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1KJ7 \| pdb_00001kj7	Download File View File

SUBSTRATE SHAPE DETERMINES SPECIFICITY OF RECOGNITION RECOGNITION FOR HIV-1 PROTEASE: ANALYSIS OF CRYSTAL STRUCTURES OF SIX SUBSTRATE COMPLEXES

Schiffer, C.A.

(2002) Structure 10: 369-381

Released	2002-03-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1 Human immunodeficiency virus type 1 group M subtype B (isolate JRCSF)
Macromolecule	POL POLYPROTEIN (protein) gag polyprotein (protein)
Unique Ligands	ACT

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1KJF \| pdb_00001kjf	Download File View File

SUBSTRATE SHAPE DETERMINES SPECIFICITY OF RECOGNITION RECOGNITION FOR HIV-1 PROTEASE: ANALYSIS OF CRYSTAL STRUCTURES OF SIX SUBSTRATE COMPLEXES

Schiffer, C.A.

(2002) Structure 10: 369-381

Released	2002-03-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1 Human immunodeficiency virus type 1 group M subtype B (isolate JRCSF)
Macromolecule	GAG POLYPROTEIN (protein) POL POLYPROTEIN (protein)
Unique Ligands	ACT

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1KJG \| pdb_00001kjg	Download File View File

SUBSTRATE SHAPE DETERMINES SPECIFICITY OF RECOGNITION RECOGNITION FOR HIV-1 PROTEASE: ANALYSIS OF CRYSTAL STRUCTURES OF SIX SUBSTRATE COMPLEXES

Schiffer, C.A.

(2002) Structure 10: 369-381

Released	2002-03-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1 Human immunodeficiency virus type 1 group M subtype B (isolate ARV2/SF2)
Macromolecule	GAG POLYPROTEIN (protein) POL POLYPROTEIN (protein)
Unique Ligands	ACT

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1KJH \| pdb_00001kjh	Download File View File

SUBSTRATE SHAPE DETERMINES SPECIFICITY OF RECOGNITION RECOGNITION FOR HIV-1 PROTEASE: ANALYSIS OF CRYSTAL STRUCTURES OF SIX SUBSTRATE COMPLEXES

Schiffer, C.A.

(2002) Structure 10: 369-381

Released	2002-03-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1 Human immunodeficiency virus type 1 group M subtype B (isolate BH10)
Macromolecule	POL POLYPROTEIN (protein)
Unique Ligands	ACT

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1MT7 \| pdb_00001mt7	Download File View File

Viability of a drug-resistant HIV-1 protease mutant: structural insights for better antiviral therapy

Prabu-Jeyabalan, M., Nalivaika, E.A., King, N.M., Schiffer, C.A.

(2003) J Virol 77: 1305-1315

Released	2003-01-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Human immunodeficiency virus 1 Human immunodeficiency virus type 1
Macromolecule	PROTEASE RETROPEPSIN (protein) Substrate analogue (protein)
Unique Ligands	ACT

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1MT8 \| pdb_00001mt8	Download File View File

Viability of a drug-resistant HIV-1 protease mutant: structural insights for better antiviral therapy

Prabu-Jeyabalan, M., Nalivaika, E.A., King, N.M., Schiffer, C.A.

(2003) J Virol 77: 1305-1315

Released	2003-01-07
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	HIV-1 CRF04_cpx Human immunodeficiency virus 1
Macromolecule	Capsid-p2 substrate peptide of HIV-1 Gag polyprotein (protein) PROTEASE RETROPEPSIN (protein)
Unique Ligands	ACT

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1MT9 \| pdb_00001mt9	Download File View File

Viability of a drug-resistant HIV-1 protease mutant: structural insights for better antiviral therapy

Prabu-Jeyabalan, M., Nalivaika, E.A., King, N.M., Schiffer, C.A.

(2003) J Virol 77: 1305-1315

Released	2003-01-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	PROTEASE RETROPEPSIN (protein) p1-p6 Gag substrate decapeptide (protein)
Unique Ligands	PO4

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1MTB \| pdb_00001mtb	Download File View File

Viability of a drug-resistant HIV-1 protease mutant: structural insights for better antiviral therapy

Prabu-Jeyabalan, M., Nalivaika, E.A., King, N.M., Schiffer, C.A.

(2003) J Virol 77: 1305-1315

Released	2003-01-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	PROTEASE RETROPEPSIN (protein)
Unique Ligands	ROC

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1N49 \| pdb_00001n49	Download File View File

Viability of a Drug-Resistant HIV-1 Protease Variant: Structural Insights for Better Anti-Viral Therapy

Prabu-Jeyabalan, M., Nalivaika, E.A., King, N.M., Schiffer, C.A.

(2003) J Virol 77: 1306-1315

Released	2003-01-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease (protein)
Unique Ligands	RIT

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1T3R \| pdb_00001t3r	Download File View File

HIV protease wild-type in complex with TMC114 inhibitor

King, N.M., Prabu-Jeyabalan, M., Nalivaika, E.A., Wigernick, P.B., de Bethune, M.P., Schiffer, C.A.

(2005) J Med Chem 48: 1813-1822

Released	2005-05-03
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	protease RETROPEPSIN (protein)
Unique Ligands	017, PO4

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1T7I \| pdb_00001t7i	Download File View File

The structural and thermodynamic basis for the binding of TMC114, a next-generation HIV-1 protease inhibitor.

King, N.M., Prabu-Jeyabalan, M., Nalivaika, E.A., Wigerinck, P.B.T.P., De Bethune, M.-P., Schiffer, C.A.

(2005) J Med Chem 48: 1813-1822

Released	2005-05-10
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Pol Polyprotein (protein)
Unique Ligands	017, ACT, PO4

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1T7J \| pdb_00001t7j	Download File View File

crystal structure of inhibitor amprenavir in complex with a multi-drug resistant variant of HIV-1 protease (L63P/V82T/I84V)

King, N.M., Prabu-Jeyabalan, M., Nalivaika, E.A., Wigerinck, P.B.T.P., De Bethune, M.-P., Schiffer, C.A.

(2005) J Med Chem 48: 1813-1822

Released	2005-05-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Pol Polyprotein (protein)
Unique Ligands	478, ACT

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1TSQ \| pdb_00001tsq	Download File View File

CRYSTAL STRUCTURE OF AP2V SUBSTRATE VARIANT OF NC-P1 DECAMER PEPTIDE IN COMPLEX WITH V82A/D25N HIV-1 PROTEASE MUTANT

Prabu-Jeyabalan, M., Nalivaika, E.A., King, N.M., Schiffer, C.A.

(2004) J Virol 78: 12446-12454

Released	2005-03-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate ARV2/SF2) Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)
Macromolecule	AP2V NC-P1 SUBSTRATE PEPTIDE (protein) Pol polyprotein (protein)
Unique Ligands	ACT

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1TSU \| pdb_00001tsu	Download File View File

CRYSTAL STRUCTURE OF DECAMER NCP1 SUBSTRATE PEPTIDE IN COMPLEX WITH WILD-TYPE D25N HIV-1 PROTEASE VARIANT

Prabu-Jeyabalan, M., Nalivaika, E.A., King, N.M., Schiffer, C.A.

(2004) J Virol 78: 12446-12454

Released	2005-03-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate ARV2/SF2) Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)
Macromolecule	NC-P1 SUBSTRATE PEPTIDE (protein) Pol polyprotein (protein)

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2F3K \| pdb_00002f3k	Download File View File

Substrate envelope and drug resistance: crystal structure of r01 in complex with wild-type hiv-1 protease

Prabu-Jeyabalan, M., King, N.M., Nalivaika, E.A., Heilek-Snyder, G., Cammack, N., Schiffer, C.A.

(2006) Antimicrob Agents Chemother 50: 1518-1521

Released	2006-11-21
Method	X-RAY DIFFRACTION 1.599 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease (protein)
Unique Ligands	PO4, RO1

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2FGU \| pdb_00002fgu	Download File View File

X-ray crystal structure of HIV-1 Protease T80S variant in complex with the inhibitor saquinavir used to explore the role of invariant Thr80 in HIV-1 protease structure, function, and viral infectivity.

Foulkes, J.E., Prabu-Jeyabalan, M., Cooper, D., Schiffer, C.A.

(2006) J Virol 80: 6906-6916

Released	2006-11-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease (protein)
Unique Ligands	ASN, DIQ, HPH, NTB, PO4, QNC

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2FGV \| pdb_00002fgv	Download File View File

X-ray crystal structure of HIV-1 Protease T80N variant in complex with the inhibitor saquinavir used to explore the role of invariant Thr80 in HIV-1 protease structure, function, and viral infectivity.

Foulkes, J.E., Prabu-Jeyabalan, M., Cooper, D., Schiffer, C.A.

(2006) J Virol 80: 6906-6916

Released	2006-11-07
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease (protein)
Unique Ligands	ASN, DIQ, HPH, NTB, PO4, QNC

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2FNS \| pdb_00002fns	Download File View File

Crystal structure of wild-type inactive (D25N) HIV-1 protease complexed with wild-type HIV-1 NC-p1 substrate.

Prabu-Jeyabalan, M., Nalivaika, E.A., Schiffer, C.A.

(2006) J Virol 80: 3607-3616

Released	2006-09-05
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	NC-P1 SUBSTRATE PEPTIDE (protein) Protease (protein)
Unique Ligands	ACT, PO4

1 to 25 of 395 Structures

Page 1 of 16

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1F7A | pdb_00001f7a

1K6C | pdb_00001k6c

1K6P | pdb_00001k6p

1K6T | pdb_00001k6t

1K6V | pdb_00001k6v

1KF9 | pdb_00001kf9

1KJ4 | pdb_00001kj4

1KJ7 | pdb_00001kj7

1KJF | pdb_00001kjf

1KJG | pdb_00001kjg

1KJH | pdb_00001kjh

1MT7 | pdb_00001mt7

1MT8 | pdb_00001mt8

1MT9 | pdb_00001mt9

1MTB | pdb_00001mtb

1N49 | pdb_00001n49

1T3R | pdb_00001t3r

1T7I | pdb_00001t7i

1T7J | pdb_00001t7j

1TSQ | pdb_00001tsq

1TSU | pdb_00001tsu

2F3K | pdb_00002f3k

2FGU | pdb_00002fgu

2FGV | pdb_00002fgv

2FNS | pdb_00002fns