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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Pagarigan, B."

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Homo sapiens (8)
	Mus musculus (2)

Taxonomy

Eukaryota (10)

Experimental Method

	X-RAY DIFFRACTION (9)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)

Release Date

	2010 - 2014 (7)
	2015 - 2019 (2)
	2020 - 2024 (1)

Enzyme Classification Name

	Transferases (4)
	Hydrolases (1)

Symmetry Type

	Asymmetric (9)
	Cyclic (1)

SCOP Classification

Alpha and beta proteins (a+b) (4)

AllSelected

1 to 10 of 10 Structures

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4OTD \| pdb_00004otd	Download File View File

Crystal Structure of PRK1 Catalytic Domain

Chamberlain, P.P., Delker, S., Pagarigan, B., Mahmoudi, A., Jackson, P., Abbassian, M., Muir, J., Raheja, N., Cathers, B.

(2014) PLoS One 9: e103638-e103638

Released	2014-08-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase N1 (protein)

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4OTG \| pdb_00004otg	Download File View File

Crystal Structure of PRK1 Catalytic Domain in Complex with Lestaurtinib

Chamberlain, P.P., Delker, S., Pagarigan, B., Mahmoudi, A., Jackson, P., Abbassian, M., Muir, J., Raheja, N., Cathers, B.

(2014) PLoS One 9: e103638-e103638

Released	2014-08-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase N1 (protein)
Unique Ligands	2V9

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4OTH \| pdb_00004oth	Download File View File

Crystal Structure of PRK1 Catalytic Domain in Complex with Ro-31-8220

Chamberlain, P.P., Delker, S., Pagarigan, B., Mahmoudi, A., Jackson, P., Abbassian, M., Muir, J., Raheja, N., Cathers, B.

(2014) PLoS One 9: e103638-e103638

Released	2014-08-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase N1 (protein)
Unique Ligands	DRN

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4OTI \| pdb_00004oti	Download File View File

Crystal Structure of PRK1 Catalytic Domain in Complex with Tofacitinib

Chamberlain, P.P., Delker, S., Pagarigan, B., Mahmoudi, A., Jackson, P., Abbassian, M., Muir, J., Raheja, N., Cathers, B.

(2014) PLoS One 9: e103638-e103638

Released	2014-08-27
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase N1 (protein)
Unique Ligands	MI1

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4TZ4 \| pdb_00004tz4	Download File View File

Crystal Structure of Human Cereblon in Complex with DDB1 and Lenalidomide

Chamberlain, P.P., Pagarigan, B., Delker, S., Leon, B., Riley, M.

To be published

Released	2014-08-06
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Homo sapiens
Macromolecule	DNA damage-binding protein 1 (protein) Protein cereblon (protein)
Unique Ligands	LVY, ZN

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4TZC \| pdb_00004tzc	Download File View File

Crystal Structure of Murine Cereblon in Complex with Thalidomide

Chamberlain, P.P., Pagarigan, B., Delker, S., Leon, B.

To be published

Released	2014-08-06
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Mus musculus
Macromolecule	Protein cereblon (protein)
Unique Ligands	EF2, SO4, ZN

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4TZU \| pdb_00004tzu	Download File View File

Crystal Structure of Murine Cereblon in Complex with Pomalidomide

Chamberlain, P.P., Pagarigan, B., Delker, S., Leon, B.

To be published

Released	2014-08-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	Protein cereblon (protein)
Unique Ligands	SO4, Y70, ZN

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5HXB \| pdb_00005hxb	Download File View File

Cereblon in complex with DDB1, CC-885, and GSPT1

Chamberlain, P.P., Matyskiela, M., Pagarigan, B.

(2016) Nature 535: 252-257

Released	2016-06-29
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Homo sapiens
Macromolecule	DNA damage-binding protein 1 (protein) Eukaryotic peptide chain release factor GTP-binding subunit ERF3A (protein) Protein cereblon (protein)
Unique Ligands	85C, ZN

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5V3O \| pdb_00005v3o	Download File View File

Cereblon in complex with DDB1 and CC-220

Matyskiela, M., Pagarigan, B., Chamberlain, P.

(2018) J Med Chem 61: 535-542

Released	2017-05-03
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	DNA damage-binding protein 1 (protein) Protein cereblon (protein)
Unique Ligands	8W7, ZN

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9DQD \| pdb_00009dqd	Download File View File

cryo-EM structure of human Cereblon/DDB1 in complex with a non-traditional CRBN binder

Zhu, J., Pagarigan, B.

(2025) ACS Med Chem Lett 16: 89-95

Released	2024-12-25
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens
Macromolecule	DNA damage-binding protein 1 (protein) Protein cereblon (protein)
Unique Ligands	A1BEP, ZN

1 to 10 of 10 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4OTD | pdb_00004otd

Crystal Structure of PRK1 Catalytic Domain

4OTG | pdb_00004otg

Crystal Structure of PRK1 Catalytic Domain in Complex with Lestaurtinib

4OTH | pdb_00004oth

Crystal Structure of PRK1 Catalytic Domain in Complex with Ro-31-8220

4OTI | pdb_00004oti

Crystal Structure of PRK1 Catalytic Domain in Complex with Tofacitinib

4TZ4 | pdb_00004tz4

Crystal Structure of Human Cereblon in Complex with DDB1 and Lenalidomide

4TZC | pdb_00004tzc

Crystal Structure of Murine Cereblon in Complex with Thalidomide

4TZU | pdb_00004tzu

Crystal Structure of Murine Cereblon in Complex with Pomalidomide

5HXB | pdb_00005hxb

Cereblon in complex with DDB1, CC-885, and GSPT1

5V3O | pdb_00005v3o

Cereblon in complex with DDB1 and CC-220

9DQD | pdb_00009dqd

cryo-EM structure of human Cereblon/DDB1 in complex with a non-traditional CRBN binder

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4OTD | pdb_00004otd

4OTG | pdb_00004otg

4OTH | pdb_00004oth

4OTI | pdb_00004oti

4TZ4 | pdb_00004tz4

4TZC | pdb_00004tzc

4TZU | pdb_00004tzu

5HXB | pdb_00005hxb

5V3O | pdb_00005v3o

9DQD | pdb_00009dqd