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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Novak, M."

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Mus musculus (12)
	Homo sapiens (6)

Taxonomy

Eukaryota (12)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.5 - 2.0 (6)
	2.0 - 2.5 (1)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (1)
	2015 - 2019 (10)
	2020 - 2024 (1)

Symmetry Type

Asymmetric (12)

SCOP Classification

	All beta proteins (6)
	Artifacts (2)

AllSelected

1 to 12 of 12 Structures

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2V17 \| pdb_00002v17	Download File View File

Structure of the complex of antibody MN423 with a fragment of tau protein

Sevcik, J., Skrabana, R., Csokova, N., Dvorsky, R., Novak, M.

(2007) FEBS Lett 581: 5872

Released	2007-12-25
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	MONOCLONAL ANTIBODY FAB FRAGMENT MN423 (protein) PEPTIDE FRAGMENT (protein)

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4TPR \| pdb_00004tpr	Download File View File

Structure of Tau5 antibody Fab fragment

Cehlar, O., Skrabana, R., Novak, M.

To be published

Released	2015-07-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	Fab heavy chain (protein) If kappa light chain (protein)
Unique Ligands	33O, CL, NA, PEG, PG4, PGE, TRS

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4TQE \| pdb_00004tqe	Download File View File

Structure of tau peptide in complex with Tau5 antibody Fab fragment

Cehlar, O., Skrabana, R., Novak, M.

To be published

Released	2015-07-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Fab heavy chain (protein) If kappa light chain (protein) Microtubule-associated protein tau (protein)
Unique Ligands	NA, PGE, SO4

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5MO3 \| pdb_00005mo3	Download File View File

Crystal structure of DC8E8 Fab in the complex with a 14-mer tau peptide at pH 8.5

Skrabana, R., Novak, M.

To be published

Released	2018-05-02
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Fab of monoclonal antibody, heavy chain (protein) Fab of monoclonal antibody, light chain (protein) Microtubule-associated protein tau (protein)
Unique Ligands	PGE
Unique branched monosaccharides	GLC

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5MP1 \| pdb_00005mp1	Download File View File

Crystal structure of DC8E8 Fab in the complex with a 14-mer tau peptide at pH 7.5

Skrabana, R., Novak, M., Cehlar, O., Kontsekova, E.

To be published

Released	2018-05-02
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Microtubule-associated protein tau (protein) antibody Fab heavy chain (protein) antibody Fab light chain (protein)

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5MP3 \| pdb_00005mp3	Download File View File

Crystal structure of DC8E8 Fab in the complex with a 30-mer tau peptide at pH 6.5

Skrabana, R., Novak, M., Cehlar, O., Kontsekova, E.

To be published

Released	2018-05-02
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	ENSMUSG00000076577 protein (protein) Igh protein (protein) Microtubule-associated protein (protein)

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5MP5 \| pdb_00005mp5	Download File View File

Crystal structure of DC8E8 Fab in the complex with a 14-mer tau peptide at pH 6.5

Skrabana, R., Novak, M.

To be published

Released	2018-05-02
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Microtubule-associated protein tau (protein) antibody Fab heavy chain (protein) antibody Fab light chain (protein)

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5MTH \| pdb_00005mth	Download File View File

Structure of DC8E8 Fab at pH 6.5 crystallized in spacegroup P21

Skrabana, R., Novak, M., Cehlar, O., Kontsekova, E.

To be published

Released	2018-05-02
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Mus musculus
Macromolecule	antibody Fab heavy chain (protein) antibody Fab light chain (protein)
Unique Ligands	ACT
Unique branched monosaccharides	GLC

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5MUQ \| pdb_00005muq	Download File View File

Crystal structure of DC8E8 Fab at pH 7.0 containing a Zn atom

Skrabana, R., Novak, M., Cehlar, O., Kontsekova, E.

To be published

Released	2018-05-02
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Mus musculus
Macromolecule	antibody Fab heavy chain (protein) antibody kappa light chain (protein)
Unique Ligands	IMD, ZN

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5MVJ \| pdb_00005mvj	Download File View File

Structure of DC8E8 Fab at pH 6.5 crystallized in space-group P1

Skrabana, R., Novak, M., Cehlar, O., Kontsekova, E.

To be published

Released	2018-05-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	antibody Fab heavy chain (protein) antibody kappa chain (protein)
Unique Ligands	CL

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5MX3 \| pdb_00005mx3	Download File View File

Structure of DC8E8 Fab crystallized at pH 8.5

Skrabana, R., Novak, M., Cehlar, O., Kontsekova, E.

To be published

Released	2017-02-01
Method	X-RAY DIFFRACTION 2.98 Å
Organisms	Mus musculus
Macromolecule	antibody Fab heavy chain (protein) antibody kappa chain (protein)

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8S6E \| pdb_00008s6e	Download File View File

Monoclonal antibody MenW targeting serogroup W of Neisseria meningitidis

Pietri, G.P., Bertuzzi, S., Karnicar, K., Unione, L., Lisnic, B., Malic, S., Miklic, K., Novak, M., Calloni, I., Santini, L., Usenik, A., Rosaria Romano, M., Adamo, R., Jonjic, S., Turk, D., Jimenez-Barbero, J., Lenac Rovis, T.

(2024) Carbohydr Polym 341: 122349-122349

Released	2024-06-26
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mus musculus
Macromolecule	MenW.01 Heavy chain (protein) MenW.01 Light chain (protein)
Unique Ligands	NA

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2V17 | pdb_00002v17

Structure of the complex of antibody MN423 with a fragment of tau protein

4TPR | pdb_00004tpr

Structure of Tau5 antibody Fab fragment

4TQE | pdb_00004tqe

Structure of tau peptide in complex with Tau5 antibody Fab fragment

5MO3 | pdb_00005mo3

Crystal structure of DC8E8 Fab in the complex with a 14-mer tau peptide at pH 8.5

5MP1 | pdb_00005mp1

Crystal structure of DC8E8 Fab in the complex with a 14-mer tau peptide at pH 7.5

5MP3 | pdb_00005mp3

Crystal structure of DC8E8 Fab in the complex with a 30-mer tau peptide at pH 6.5

5MP5 | pdb_00005mp5

Crystal structure of DC8E8 Fab in the complex with a 14-mer tau peptide at pH 6.5

5MTH | pdb_00005mth

Structure of DC8E8 Fab at pH 6.5 crystallized in spacegroup P21

5MUQ | pdb_00005muq

Crystal structure of DC8E8 Fab at pH 7.0 containing a Zn atom

5MVJ | pdb_00005mvj

Structure of DC8E8 Fab at pH 6.5 crystallized in space-group P1

5MX3 | pdb_00005mx3

Structure of DC8E8 Fab crystallized at pH 8.5

8S6E | pdb_00008s6e

Monoclonal antibody MenW targeting serogroup W of Neisseria meningitidis

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

2V17 | pdb_00002v17

4TPR | pdb_00004tpr

4TQE | pdb_00004tqe

5MO3 | pdb_00005mo3

5MP1 | pdb_00005mp1

5MP3 | pdb_00005mp3

5MP5 | pdb_00005mp5

5MTH | pdb_00005mth

5MUQ | pdb_00005muq

5MVJ | pdb_00005mvj

5MX3 | pdb_00005mx3

8S6E | pdb_00008s6e