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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Mantis, N."

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Search Summary

This query matches 23 Structures.

Refinements

Structure Determination Methodology

experimental (23)

Scientific Name of Source Organism

	Ricinus communis (14)
	Vicugna pacos (13)
	Borreliella burgdorferi B31 (5)
	Homo sapiens (5)
	Mus musculus (3)
	Borreliella burgdorferi 297 (2)
	Borreliella burgdorferi (1)

Taxonomy

	Eukaryota (21)
	Bacteria (8)

Experimental Method

X-RAY DIFFRACTION (23)

Polymer Entity Type

Protein (23)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (5)
	2.0 - 2.5 (5)
	2.5 - 3.0 (6)
	3.0 - 3.5 (5)

Release Date

	2010 - 2014 (5)
	2015 - 2019 (6)
	2020 - 2024 (12)

Enzyme Classification Name

Hydrolases (14)

Symmetry Type

	Asymmetric (18)
	Cyclic (5)

SCOP Classification

	All beta proteins (11)
	Alpha and beta proteins (a+b) (10)

AllSelected

1 to 23 of 23 Structures

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4LGP \| pdb_00004lgp	Download File View File

Ricin A chain bound to camelid nanobody (VHH1)

Rudolph, M.J., Cheung, J., Franklin, M., Burshteyn, F., Cassidy, M., Gary, E., Mantis, N.

(2014) J Mol Biology 426: 3057-3068

Released	2014-06-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Ricinus communis Vicugna pacos
Macromolecule	Ricin (protein) VHH1 camelid nanobody (protein)
Unique Ligands	CL, EDO

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4LGR \| pdb_00004lgr	Download File View File

Ricin A chain bound to camelid nanobody (VHH3)

Rudolph, M.J., Cheung, J., Franklin, M., Burshteyn, F., Cassidy, M., Gary, E., Mantis, N.

(2014) J Mol Biology 426: 3057-3068

Released	2014-06-11
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Ricinus communis Vicugna pacos
Macromolecule	Camelid nanobody (VHH3) (protein) Ricin (protein)
Unique Ligands	ACY, CL, EDO, ZN

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4LGS \| pdb_00004lgs	Download File View File

Ricin A chain bound to camelid nanobody (VHH4)

Rudolph, M.J., Cheung, J., Franklin, M., Burshteyn, F., Cassidy, M., Gary, E., Mantis, N.

(2014) J Mol Biology 426: 3057-3068

Released	2014-06-11
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Ricinus communis Vicugna pacos
Macromolecule	Camelid nanobody (VHH4) (protein) Ricin (protein)

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4LHJ \| pdb_00004lhj	Download File View File

Ricin A chain bound to camelid nanobody (VHH5)

Rudolph, M.J., Cheung, J., Franklin, M., Burshteyn, F., Cassidy, M., Gary, E., Mantis, N.

(2014) J Mol Biology 426: 3057-3068

Released	2014-06-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Ricinus communis Vicugna pacos
Macromolecule	Camelid antibody (protein) Ricin (protein)
Unique Ligands	CL

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4LHQ \| pdb_00004lhq	Download File View File

Ricin A chain bound to camelid nanobody (VHH8)

Rudolph, M.J., Cheung, J., Franklin, M., Burshteyn, F., Cassidy, M., Gary, E., Mantis, N.

(2014) J Mol Biology 426: 3057-3068

Released	2014-06-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Ricinus communis Vicugna pacos
Macromolecule	Camelid nanobody (protein) Ricin (protein)

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5BOZ \| pdb_00005boz	Download File View File

Ricin A chain bound to camelid nanobody (VHH9)(E1)

Rudolph, M.J., Mantis, N.

(2017) J Biological Chem 292: 872-883

Released	2016-12-07
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Ricinus communis Vicugna pacos
Macromolecule	Ricin (protein) VHH single chain antibody E1 (protein)
Unique Ligands	CL, SO4

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5E1H \| pdb_00005e1h	Download File View File

Ricin toxin in complex with neutralizing single chain monoclonal antibodies (VHHs)

Rudolph, M.J., Vance, D., Shoemaker, C., Mantis, N.

(2016) Proteins 84: 1162-1172

Released	2016-08-03
Method	X-RAY DIFFRACTION 2.032 Å
Organisms	Ricinus communis Vicugna pacos
Macromolecule	F8(JOB10) VHH antibody (protein) Ricin (protein)
Unique Ligands	CL

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5U4L \| pdb_00005u4l	Download File View File

RTA-V1C7_G29R-high-salt

Rudolph, M.J., Mantis, N.

(2017) Proteins 85: 1994-2008

Released	2017-12-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Ricinus communis Vicugna pacos
Macromolecule	Ricin (protein) V1C7 VHH antibody G29R variant (protein)
Unique Ligands	CL, EDO, PO4

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5U4M \| pdb_00005u4m	Download File View File

RTA-V1C7-G29R-no_salt

Rudolph, M.J., Mantis, N.

(2017) Proteins 85: 1994-2008

Released	2017-12-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Ricinus communis Vicugna pacos
Macromolecule	Ricin (protein) V1C7 VHH antibody (protein)
Unique Ligands	CL

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6CWG \| pdb_00006cwg	Download File View File

Ricin catalytic subunit bound go A9 VHH antibody

Rudolph, M.J., Mantis, N.

(2018) Protein Eng Des Sel 31: 277-287

Released	2019-01-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Ricinus communis Vicugna pacos
Macromolecule	Ricin (protein) VHH antibody (protein)
Unique Ligands	CL

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6CWK \| pdb_00006cwk	Download File View File

Anti-RTA VHH antibody

Rudolph, M.J., Mantis, N.

(2018) Protein Eng Des Sel 31: 277-287

Released	2019-01-16
Method	X-RAY DIFFRACTION 1.256 Å
Organisms	Vicugna pacos
Macromolecule	Anti-Ricin antibody (protein)
Unique Ligands	CL, EDO, SO4

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7TGF \| pdb_00007tgf	Download File View File

Single-domain VHH intrabodies neutralize ricin toxin.

Rudolph, M.J., Mantis, N.

(2022) J Biological Chem 298: 101742-101742

Released	2022-10-12
Method	X-RAY DIFFRACTION 1.347 Å
Organisms	Ricinus communis Vicugna pacos
Macromolecule	Ricin chain A (protein) VHH camelid antibody (protein)
Unique Ligands	CL, EDO

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7TH2 \| pdb_00007th2	Download File View File

Single-domain VHH intrabodies neutralize ricin toxin

Rudolph, M.J., Mantis, N.

(2022) J Biological Chem 298: 101742-101742

Released	2022-10-12
Method	X-RAY DIFFRACTION 1.838 Å
Organisms	Ricinus communis Vicugna pacos
Macromolecule	Ricin A chain (protein) VHH antibody (protein)
Unique Ligands	CL, EDO, MES, SO4

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7UIJ \| pdb_00007uij	Download File View File

Structural studies of B5-OspC complex

Rudolph, M.J., Mantis, N.

(2023) mBio 14: e0298122-e0298122

Released	2023-04-05
Method	X-RAY DIFFRACTION 2.701 Å
Organisms	Borreliella burgdorferi B31 Mus musculus
Macromolecule	Monoclonal B5 Fab Heavy Chain (protein) Monoclonal B5 Fab Light Chain (protein) Outer surface protein C (protein)
Unique Ligands	EDO

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7UJ2 \| pdb_00007uj2	Download File View File

OspC Type B

Rudolph, M.J., Mantis, N.

(2023) mBio 14: e0298122-e0298122

Released	2023-04-05
Method	X-RAY DIFFRACTION 1.503 Å
Organisms	Borreliella burgdorferi 297
Macromolecule	Outer surface protein C (protein)
Unique Ligands	CL, EDO

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7UJ6 \| pdb_00007uj6	Download File View File

Outer Surface Protein C Type K

Rudolph, M.J., Mantis, N.

(2023) mBio 14: e0298122-e0298122

Released	2023-04-05
Method	X-RAY DIFFRACTION 1.951 Å
Organisms	Borreliella burgdorferi 297
Macromolecule	Outer surface protein C (protein)

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8TFH \| pdb_00008tfh	Download File View File

Ricin in complex with Fab JB4

Rudolph, M.J., Mantis, N.

(2023) Biochemistry 62: 3181-3187

Released	2024-04-17
Method	X-RAY DIFFRACTION 3.29 Å
Organisms	Mus musculus Ricinus communis
Macromolecule	JB4 monoclonal antibody heavy chain (protein) JB4 monoclonal antibody light chain (protein) Ricin A chain (protein) Ricin B chain (protein)
Unique Ligands	CL, EDO, SO4
Unique branched monosaccharides	BMA, FUC, NAG

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8TFL \| pdb_00008tfl	Download File View File

Ricin in complex with Fab SylH3

Rudolph, M.J., Mantis, N.

(2023) Biochemistry 62: 3181-3187

Released	2024-04-17
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Mus musculus Ricinus communis
Macromolecule	Ricin A chain (protein) Ricin B chain (protein) SylH3 Fab heavy chain (protein) SylH3 Fab light chain (protein)
Unique Ligands	2PE, NDG
Unique branched monosaccharides	NAG, NDG

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8TUZ \| pdb_00008tuz	Download File View File

Fab 857-2 in complex with OspA

Rudolph, M.J., Mantis, N.

To be published

Released	2024-08-28
Method	X-RAY DIFFRACTION 2.186 Å
Organisms	Borreliella burgdorferi Homo sapiens
Macromolecule	Heavy chain of human monoclonal antibody 857-2 (protein) Light chain of human monoclonal antibody 857-2 (protein) Outer surface protein A (protein)
Unique Ligands	CL, EDO

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8TV3 \| pdb_00008tv3	Download File View File

Fab 221-5 in complex with OspA

Rudolph, M.J., Mantis, N.

To be published

Released	2024-08-28
Method	X-RAY DIFFRACTION 2.312 Å
Organisms	Borreliella burgdorferi B31 Homo sapiens
Macromolecule	Heavy chain of human monoclonal Fab 221-5 (protein) Light chain of human monoclonal Fab 22105 (protein) Outer surface protein A (protein)
Unique Ligands	2PE, CL, EDO

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8TVD \| pdb_00008tvd	Download File View File

Fab 221-11 in complex with OspA

Rudolph, M.J., Mantis, N.

To be published

Released	2024-08-28
Method	X-RAY DIFFRACTION 3.077 Å
Organisms	Borreliella burgdorferi B31 Homo sapiens
Macromolecule	Heavy chain of Fab 221-11 (protein) Light chain of Fab 221-11 (protein) Outer surface protein A (protein)
Unique Ligands	CL, SO4

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8TVJ \| pdb_00008tvj	Download File View File

Fab 227-1 in complex with OspA

Rudolph, M.J., Mantis, N.

To be published

Released	2024-08-28
Method	X-RAY DIFFRACTION 3.168 Å
Organisms	Borreliella burgdorferi B31 Homo sapiens
Macromolecule	Heavy chain of Fab 227-1 (protein) Light chain of Fab 227-1 (protein) Outer surface protein A (protein)

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9BIF \| pdb_00009bif	Download File View File

Fab B11-OspCA complex

Rudolph, M.J., Mantis, N.

(2024) J Immunol 213: 1234-1243

Released	2024-11-20
Method	X-RAY DIFFRACTION 3.09 Å
Organisms	Borreliella burgdorferi B31 Homo sapiens
Macromolecule	Outer surface protein C (protein) VH-CH1 domain of B11 Fab (protein) VH-VL domain of B11 Fab (protein)
Unique Ligands	CL, PR

1 to 23 of 23 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4LGP | pdb_00004lgp

4LGR | pdb_00004lgr

4LGS | pdb_00004lgs

4LHJ | pdb_00004lhj

4LHQ | pdb_00004lhq

5BOZ | pdb_00005boz

5E1H | pdb_00005e1h

5U4L | pdb_00005u4l

5U4M | pdb_00005u4m

6CWG | pdb_00006cwg

6CWK | pdb_00006cwk

7TGF | pdb_00007tgf

7TH2 | pdb_00007th2

7UIJ | pdb_00007uij

7UJ2 | pdb_00007uj2

7UJ6 | pdb_00007uj6

8TFH | pdb_00008tfh

8TFL | pdb_00008tfl

8TUZ | pdb_00008tuz

8TV3 | pdb_00008tv3

8TVD | pdb_00008tvd

8TVJ | pdb_00008tvj

9BIF | pdb_00009bif