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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Gertz, M."

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Search Summary

This query matches 28 Structures.

Refinements

Structure Determination Methodology

experimental (28)

Scientific Name of Source Organism

	Homo sapiens (23)
	Danio rerio (9)
	Mytilus galloprovincialis (3)
	Cryptococcus neoformans (2)
	Thermotoga maritima (2)
	synthetic construct (1)

Taxonomy

	Eukaryota (28)
	Bacteria (2)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (28)

Polymer Entity Type

Protein (28)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (4)
	2.0 - 2.5 (9)
	2.5 - 3.0 (7)
	3.0 - 3.5 (6)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (26)

Enzyme Classification Name

	Transferases (23)
	Hydrolases (23)
	Ligases (12)
	Lyases (2)

Symmetry Type

	Asymmetric (26)
	Cyclic (2)

SCOP Classification

Alpha and beta proteins (a/b) (5)

AllSelected

1 to 25 of 28 Structures

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2W3N \| pdb_00002w3n	Download File View File

Structure and inhibition of the CO2-sensing carbonic anhydrase Can2 from the pathogenic fungus Cryptococcus neoformans

Schlicker, C., Hall, R.A., Vullo, D., Middelhaufe, S., Gertz, M., Supuran, C.T., Muehlschlegel, F.A., Steegborn, C.

(2009) J Mol Biology 385: 1207-1220

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Cryptococcus neoformans
Macromolecule	CARBONIC ANHYDRASE 2 (protein)
Unique Ligands	ACT, GOL, ZN

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2W3Q \| pdb_00002w3q	Download File View File

Structure and inhibition of the CO2-sensing carbonic anhydrase Can2 from the pathogenic fungus Cryptococcus neoformans

Schlicker, C., Hall, R.A., Vullo, D., Middelhaufe, S., Gertz, M., Supuran, C.T., Muehlschlegel, F.A., Steegborn, C.

(2009) J Mol Biology 385: 1207

Released	2008-12-30
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Cryptococcus neoformans
Macromolecule	CARBONIC ANHYDRASE 2 (protein)
Unique Ligands	CL, ZN

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4BN4 \| pdb_00004bn4	Download File View File

Structure of human SIRT3 in complex with ADP-ribose

Nguyen, G.T.T., Schaefer, S., Gertz, M., Weyand, M., Steegborn, C.

(2013) Acta Crystallogr D Biol Crystallogr 69: 1423

Released	2013-06-26
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-3, MITOCHONDRIAL (protein)
Unique Ligands	AR6, NA, OP2, ZN

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4BN5 \| pdb_00004bn5	Download File View File

Structure of human SIRT3 in complex with SRT1720 inhibitor

Nguyen, G.T.T., Schaefer, S., Gertz, M., Weyand, M., Steegborn, C.

(2013) Acta Crystallogr D Biol Crystallogr 69: 1423

Released	2013-06-26
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Homo sapiens
Macromolecule	NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-3, MITOCHONDRIAL (protein)
Unique Ligands	CNA, GOL, SR7, ZN

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4BUZ \| pdb_00004buz	Download File View File

SIR2 COMPLEX STRUCTURE MIXTURE OF EX-527 INHIBITOR AND REACTION PRODUCTS OR OF REACTION SUBSTRATES P53 PEPTIDE AND NAD

Weyand, M., Lakshminarasimhan, M., Gertz, M., Steegborn, C.

(2013) Proc Natl Acad Sci U S A 110: E2772

Released	2013-07-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens Thermotoga maritima
Macromolecule	CELLULAR TUMOR ANTIGEN P53 (protein) NAD-DEPENDENT PROTEIN DEACETYLASE (protein)
Unique Ligands	EDO, NAD, OAD, OCZ, ZN

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4BV2 \| pdb_00004bv2	Download File View File

CRYSTAL STRUCTURE OF SIR2 IN COMPLEX WITH THE INHIBITOR EX-527, 2'-O-ACETYL-ADP-RIBOSE AND DEACETYLATED P53-PEPTIDE

Gertz, M., Weyand, M., Steegborn, C.

(2013) Proc Natl Acad Sci U S A 110: E2772

Released	2013-07-17
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens Thermotoga maritima
Macromolecule	CELLULAR TUMOR ANTIGEN P53 (protein) NAD-DEPENDENT PROTEIN DEACETYLASE (protein)
Unique Ligands	OAD, OCZ, ZN

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4BV3 \| pdb_00004bv3	Download File View File

CRYSTAL STRUCTURE OF SIRT3 IN COMPLEX WITH THE INHIBITOR EX-527 AND NAD

Gertz, M., Nguyen, N.T.T., Weyand, M., Steegborn, C.

(2013) Proc Natl Acad Sci U S A 110: E2772

Released	2013-07-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-3, MITOCHONDRIAL (protein)
Unique Ligands	APR, CL, GOL, NA, NAD, NO3, OCZ, ZN

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4BVB \| pdb_00004bvb	Download File View File

CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH THE INHIBITOR EX-527 AND ADP-RIBOSE

Gertz, M., Weyand, M., Steegborn, C.

(2013) Proc Natl Acad Sci U S A 110: E2772

Released	2013-07-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-3, MITOCHONDRIAL (protein)
Unique Ligands	AR6, OCZ, ZN

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4BVE \| pdb_00004bve	Download File View File

CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH THIOALKYLIMIDATE FORMED FROM THIO-ACETYL-LYSINE ACS2-PEPTIDE

Gertz, M., Weyand, M., Steegborn, C.

(2013) Proc Natl Acad Sci U S A 110: E2772

Released	2013-07-17
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	ACETYL-COENZYME A SYNTHETASE 2-LIKE, MITOCHONDRIAL (protein) NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-3, MITOCHONDRIAL (protein)
Unique Ligands	CL, EDO, PEG, SO4, ZN

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4BVF \| pdb_00004bvf	Download File View File

CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH THIOALKYLIMIDATE FORMED FROM THIO-ACETYL-LYSINE ACS2-PEPTIDE CRYSTALLIZED IN PRESENCE OF THE INHIBITOR EX-527

Gertz, M., Weyand, M., Steegborn, C.

(2013) Proc Natl Acad Sci U S A 110: E2772

Released	2013-07-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	ACETYL-COENZYME A SYNTHETASE 2-LIKE, MITOCHONDRIAL (protein) NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-3, MITOCHONDRIAL (protein)
Unique Ligands	EDO, ZN

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4BVG \| pdb_00004bvg	Download File View File

CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH NATIVE ALKYLIMIDATE FORMED FROM ACETYL-LYSINE ACS2-PEPTIDE CRYSTALLIZED IN PRESENCE OF THE INHIBITOR EX-527

Nguyen, G.T.T., Gertz, M., Weyand, M., Steegborn, C.

(2013) Proc Natl Acad Sci U S A 110: E2772-E2781

Released	2013-07-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	ACETYL-COENZYME A SYNTHETASE 2-LIKE, MITOCHONDRIAL (protein) NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-3, MITOCHONDRIAL (protein)
Unique Ligands	EDO, GOL, PEG, SO4, XYQ, ZN

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4BVH \| pdb_00004bvh	Download File View File

CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH THE INHIBITOR EX-527 AND 2'-O-ACETYL-ADP-RIBOSE

Gertz, M., Weyand, M., Steegborn, C.

(2013) Proc Natl Acad Sci U S A 110: E2772

Released	2013-07-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-3, MITOCHONDRIAL (protein)
Unique Ligands	AR6, CL, EDO, GOL, NA, OAD, OCZ, ZN

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4C78 \| pdb_00004c78	Download File View File

Complex of human Sirt3 with Bromo-Resveratrol and ACS2 peptide

Nguyen, G.T.T., Gertz, M., Weyand, M., Steegborn, C.

(2013) Chem Biol 20: 1375

Released	2013-11-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ACETYL-COENZYME A SYNTHETASE 2-LIKE, MITOCHONDRIAL (protein) NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-3, MITOCHONDRIAL (protein)
Unique Ligands	BVB, ZN

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4C7B \| pdb_00004c7b	Download File View File

Complex of human Sirt3 with Bromo-Resveratrol and Fluor-De-Lys peptide

Nguyen, G.T.T., Gertz, M., Weyand, M., Steegborn, C.

(2013) Chem Biol 20: 1375

Released	2013-11-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-3, MITOCHONDRIAL (protein) PEPTIDE (protein)
Unique Ligands	BVB, GOL, IPA, ZN

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4CN8 \| pdb_00004cn8	Download File View File

Structure of proximal thread matrix protein 1 (PTMP1) from the mussel byssus

Gertz, M., Suhre, M.H., Scheibel, T., Steegborn, C.

(2014) Nat Commun 5: 3392

Released	2014-03-12
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Mytilus galloprovincialis
Macromolecule	PROXIMAL THREAD MATRIX PROTEIN 1 (protein)
Unique Ligands	EDO, SO4

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4CN9 \| pdb_00004cn9	Download File View File

structure of proximal thread matrix protein 1 (PTMP1) from the mussel byssus with zinc occupied MIDAS motif

Gertz, M., Suhre, M.H., Scheibel, T., Steegborn, C.

(2014) Nat Commun 5: 3392

Released	2014-03-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mytilus galloprovincialis
Macromolecule	PROXIMAL THREAD MATRIX PROTEIN 1 (protein)
Unique Ligands	EDO, GOL, SO4, ZN

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4CNB \| pdb_00004cnb	Download File View File

Structure of proximal thread matrix protein 1 (PTMP1) from the mussel byssus - Crystal form 2

Gertz, M., Suhre, M.H., Scheibel, T., Steegborn, C.

(2014) Nat Commun 5: 3392

Released	2014-03-12
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mytilus galloprovincialis
Macromolecule	PROXIMAL THREAD MATRIX PROTEIN 1 (protein)
Unique Ligands	EDO, SO4

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4HD8 \| pdb_00004hd8	Download File View File

Crystal structure of human Sirt3 in complex with Fluor-de-Lys peptide and piceatannol

Nguyen, G.T.T., Gertz, M., Steegborn, C.

(2012) PLoS One 7: e49761-e49761

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Fluor-de-Lys peptide (protein) NAD-dependent protein deacetylase sirtuin-3, mitochondrial (protein)
Unique Ligands	IPA, PIT, ZN

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4HDA \| pdb_00004hda	Download File View File

Crystal structure of human Sirt5 in complex with Fluor-de-Lys peptide and resveratrol

Gertz, M., Steegborn, C.

(2012) PLoS One 7: e49761-e49761

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.601 Å
Organisms	Homo sapiens
Macromolecule	Fluor-de-Lys peptide (protein) NAD-dependent protein deacylase sirtuin-5, mitochondrial (protein)
Unique Ligands	STL, ZN

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4UTN \| pdb_00004utn	Download File View File

Crystal structure of zebrafish Sirtuin 5 in complex with succinylated CPS1-peptide

Pannek, M., Gertz, M., Steegborn, C.

(2014) Angew Chem Int Ed Engl 53: 10728

Released	2014-08-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Danio rerio Homo sapiens
Macromolecule	NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL (protein) SUCCINYL-CPS1-PEPTIDE (protein)
Unique Ligands	DMS, EDO, EPE, ZN

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4UTR \| pdb_00004utr	Download File View File

Crystal structure of zebrafish Sirtuin 5 in complex with glutarylated CPS1-peptide

Pannek, M., Gertz, M., Steegborn, C.

(2014) Angew Chem Int Ed Engl 53: 10728

Released	2014-08-20
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Danio rerio Homo sapiens
Macromolecule	GLUTARYL-CPS1 PEPTIDE (protein) NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL (protein)
Unique Ligands	DMS, EDO, GUA, NA, ZN

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4UTV \| pdb_00004utv	Download File View File

Crystal structure of zebrafish Sirtuin 5 in complex with 3-phenyl- succinylated CPS1-peptide

Pannek, M., Gertz, M., Steegborn, C.

(2014) Angew Chem Int Ed Engl 53: 10728

Released	2014-08-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Danio rerio Homo sapiens
Macromolecule	CARBAMOYLPHOSPHATE SYNTHETASE I (protein) NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL (protein)
Unique Ligands	DMS, EPE, F9V, FSL, NA, ZN

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4UTX \| pdb_00004utx	Download File View File

Crystal structure of zebrafish Sirtuin 5 in complex with 3-nitro- propionylated CPS1-peptide

Pannek, M., Gertz, M., Steegborn, C.

(2014) Angew Chem Int Ed Engl 53: 10728

Released	2014-08-20
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Danio rerio Homo sapiens
Macromolecule	CARBAMOYLPHOSPHATE SYNTHETASE I (protein) NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL (protein)
Unique Ligands	3NP, DMS, EDO, EPE, NA, ZN

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4UTZ \| pdb_00004utz	Download File View File

Crystal structure of zebrafish Sirtuin 5 in complex with adipoylated CPS1-peptide

Pannek, M., Gertz, M., Steegborn, C.

(2014) Angew Chem Int Ed Engl 53: 10728

Released	2014-08-20
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Danio rerio Homo sapiens
Macromolecule	CARBAMOYLPHOSPHATE SYNTHETASE I (protein) SIRTUIN 5 (protein)
Unique Ligands	0L1, DMS, EDO, EPE, NA, ZN

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4UU7 \| pdb_00004uu7	Download File View File

Crystal structure of zebrafish Sirtuin 5 in complex with 3-methyl- succinylated CPS1-peptide

Pannek, M., Gertz, M., Steegborn, C.

(2014) Angew Chem Int Ed Engl 53: 10728

Released	2014-08-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Danio rerio Homo sapiens
Macromolecule	CARBAMOYLPHOSPHATE SYNTHETASE I (protein) NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL (protein)
Unique Ligands	DMS, EDO, EPE, JO3, NA, SUH, ZN

1 to 25 of 28 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2W3N | pdb_00002w3n

2W3Q | pdb_00002w3q

4BN4 | pdb_00004bn4

4BN5 | pdb_00004bn5

4BUZ | pdb_00004buz

4BV2 | pdb_00004bv2

4BV3 | pdb_00004bv3

4BVB | pdb_00004bvb

4BVE | pdb_00004bve

4BVF | pdb_00004bvf

4BVG | pdb_00004bvg

4BVH | pdb_00004bvh

4C78 | pdb_00004c78

4C7B | pdb_00004c7b

4CN8 | pdb_00004cn8

4CN9 | pdb_00004cn9

4CNB | pdb_00004cnb

4HD8 | pdb_00004hd8

4HDA | pdb_00004hda

4UTN | pdb_00004utn

4UTR | pdb_00004utr

4UTV | pdb_00004utv

4UTX | pdb_00004utx

4UTZ | pdb_00004utz

4UU7 | pdb_00004uu7