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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Freire, F."

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Search Summary

This query matches 22 Structures.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	Acetivibrio thermocellus (8)
	Homo sapiens (7)
	Amaranthus caudatus (3)
	Paracoccus pantotrophus (3)
	Acetivibrio thermocellus ATCC 27405 (1)
	synthetic construct (1)

Taxonomy

	Bacteria (12)
	Eukaryota (7)
	Eukaryota (eukaryotes) (3)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (19)
	SOLUTION NMR (3)

Polymer Entity Type

Protein (22)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (9)
	2.0 - 2.5 (2)
	3.5 - 4.0 (2)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (5)
	2015 - 2019 (9)
	2020 - 2024 (4)
	2025 - 2029 (1)

Enzyme Classification Name

Hydrolases (9)

Symmetry Type

	Asymmetric (19)
	Cyclic (2)
	Dihedral (1)

SCOP Classification

All beta proteins (3)

AllSelected

1 to 22 of 22 Structures

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Explore in 3D

1ZNT \| pdb_00001znt	Download File View File

18 NMR structures of AcAMP2-Like Peptide with non Natural Fluoroaromatic Residue (AcAMP2F18Pff/Y20Pff) complex with N,N,N-triacetylchitotriose

Chavez, M.I., Andreu, C., Vidal, P., Aboitiz, N., Freire, F., Groves, P., Asensio, J.L., Asensio, G., Muraki, M., Canada, F.J., Jimenez-Barbero, J.

(2005) Chemistry 11: 7060-7074

Released	2005-12-06
Method	SOLUTION NMR
Organisms	Amaranthus caudatus
Macromolecule	AMARANTHUS CAUDATUS ANTIMICROBIAL PEPTIDE 2 (protein)
Unique branched monosaccharides	NAG

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1ZUV \| pdb_00001zuv	Download File View File

24 NMR structures of AcAMP2-Like Peptide with Phenylalanine 18 mutated to Tryptophan

Chavez, M.I., Andreu, C., Vidal, P., Freire, F., Aboitiz, N., Groves, P., Asensio, J.L., Asensio, G., Muraki, M., Canada, F.J., Jimenez-Barbero, J.

(2005) Chemistry 11: 7060-7074

Released	2005-12-06
Method	SOLUTION NMR
Organisms	Amaranthus caudatus
Macromolecule	AMARANTHUS CAUDATUS ANTIMICROBIAL PEPTIDE 2 (protein)

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1ZWU \| pdb_00001zwu	Download File View File

30 NMR structures of AcAMP2-like peptide with non natural beta-(2-naphthyl)-alanine residue.

Chavez, M.I., Andreu, C., Vidal, P., Freire, F., Aboitiz, N., Groves, P., Asensio, J.L., Asensio, G., Muraki, M., Canada, F.J., Jimenez-Barbero, J.

(2005) Chemistry 11: 7060-7074

Released	2005-12-06
Method	SOLUTION NMR
Organisms	Amaranthus caudatus
Macromolecule	AMARANTHUS CAUDATUS ANTIMICROBIAL PEPTIDE 2 (ACMP2) (protein)

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4AYZ \| pdb_00004ayz	Download File View File

X-ray Structure of human SOUL

Freire, F., Carvalho, A.L., Aveiro, S.S., Charbonnier, P., Moulis, J.M., Romao, M.J., Goodfellow, B.J., Macedo, A.L.

To be published

Released	2012-07-11
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens
Macromolecule	HEME-BINDING PROTEIN 2 (protein)

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4B0Y \| pdb_00004b0y	Download File View File

Determination of X-ray Structure of human SOUL by Molecular Replacement

Freire, F., Carvalho, A.L., Aveiro, S.S., Charbonnier, P., Moulis, J.M., Romao, M.J., Goodfellow, B.J., Macedo, A.L.

To be published

Released	2012-08-01
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens
Macromolecule	HEME-BINDING PROTEIN 2 (protein)

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4BWT \| pdb_00004bwt	Download File View File

Three-dimensional structure of Paracoccus pantotrophus pseudoazurin at pH 6.5

Freire, F., Mestre, A., Pinho, J., Najmudin, S., Bonifacio, C., Pauleta, S.R., Romao, M.J.

To be published

Released	2014-07-16
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Paracoccus pantotrophus
Macromolecule	PSEUDOAZURIN (protein)
Unique Ligands	CU, SO4

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4BWU \| pdb_00004bwu	Download File View File

Three-dimensional structure of the K109A mutant of Paracoccus pantotrophus pseudoazurin at pH 5.5

Freire, F., Mestre, A., Pinho, J., Najmudin, S., Bonifacio, C., Pauleta, S.R., Romao, M.J.

To be published

Released	2014-07-16
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Paracoccus pantotrophus
Macromolecule	PSEUDOAZURIN (protein)
Unique Ligands	CU, SO4

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4BXV \| pdb_00004bxv	Download File View File

Three-dimensional structure of the mutant K109A of Paracoccus pantotrophus pseudoazurin at pH 7.0

Freire, F., Mestre, A., Pinho, J., Najmudin, S., Bonifacio, C., Pauleta, S.R., Romao, M.J.

To be published

Released	2014-07-30
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Paracoccus pantotrophus
Macromolecule	PSEUDOAZURIN (protein)
Unique Ligands	CU, SO4

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4CKQ \| pdb_00004ckq	Download File View File

X-ray structure of glucuronoxylan-xylanohydrolase (Xyn30A) from Clostridium thermocellum

Freire, F., Verma, A.K., Goyal, A., Fontes, C.M.G.A., Najmudin, S.

(2016) Acta Crystallogr D Biol Crystallogr 72: 1162

Released	2015-01-21
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Acetivibrio thermocellus synthetic construct
Macromolecule	4 HISTIDINES FROM PROTEOLYSED HIS-TAG (protein) CARBOHYDRATE BINDING FAMILY 6 (protein)
Unique Ligands	MLA

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4UQ9 \| pdb_00004uq9	Download File View File

X-ray structure of glucuronoxylan-xylanohydrolase (Xyn30A) from Clostridium thermocellum at 1.77 A resolution

Freire, F., Verma, A.K., Goyal, A., Fontes, C.M.G.A., Najmudin, S.

(2016) Acta Crystallogr D Biol Crystallogr 72: 1162

Released	2015-06-24
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Acetivibrio thermocellus
Macromolecule	CARBOHYDRATE BINDING FAMILY 6 (protein)

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4UQA \| pdb_00004uqa	Download File View File

X-ray structure of glucuronoxylan-xylanohydrolase (Xyn30A) from Clostridium thermocellum

Freire, F., Verma, A.K., Goyal, A., Fontes, C.M.G.A., Najmudin, S.

(2016) Acta Crystallogr D Biol Crystallogr 72: 1162

Released	2015-06-24
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Acetivibrio thermocellus
Macromolecule	CARBOHYDRATE BINDING FAMILY 6 (protein)
Unique Ligands	HIS

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4UQB \| pdb_00004uqb	Download File View File

X-ray structure of glucuronoxylan-xylanohydrolase (Xyn30A) from Clostridium thermocellum at 1.68 A resolution

Freire, F., Verma, A.K., Goyal, A., Fontes, C.M.G.A., Najmudin, S.

(2016) Acta Crystallogr D Biol Crystallogr 72: 1162

Released	2015-06-24
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Acetivibrio thermocellus
Macromolecule	CARBOHYDRATE BINDING FAMILY 6 (protein)
Unique Ligands	EPE, SO4

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4UQC \| pdb_00004uqc	Download File View File

X-ray structure of glucuronoxylan-xylanohydrolase (Xyn30A) from Clostridium thermocellum at 1.30 A resolution

Freire, F., Verma, A.K., Goyal, A., Fontes, C.M.G.A., Najmudin, S.

(2016) Acta Crystallogr D Biol Crystallogr 72: 1162

Released	2015-06-24
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Acetivibrio thermocellus
Macromolecule	CARBOHYDRATE BINDING FAMILY 6 (protein)
Unique Ligands	GLC, TAR, TLA

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4UQD \| pdb_00004uqd	Download File View File

X-ray structure of glucuronoxylan-xylanohydrolase (Xyn30A) from Clostridium thermocellum at 1.25 A resolution

Freire, F., Verma, A.K., Goyal, A., Fontes, C.M.G.A., Najmudin, S.

(2016) Acta Crystallogr D Biol Crystallogr 72: 1162

Released	2015-06-24
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Acetivibrio thermocellus
Macromolecule	CARBOHYDRATE BINDING FAMILY 6 (protein)
Unique Ligands	GOL, THR, TRS

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4UQE \| pdb_00004uqe	Download File View File

X-ray structure of glucuronoxylan-xylanohydrolase (Xyn30A) from Clostridium thermocellum at 1.28 A resolution

Freire, F., Verma, A.K., Goyal, A., Fontes, C.M.G.A., Najmudin, S.

(2016) Acta Crystallogr D Biol Crystallogr 72: 1162

Released	2015-06-24
Method	X-RAY DIFFRACTION 1.28 Å
Organisms	Acetivibrio thermocellus
Macromolecule	CARBOHYDRATE BINDING FAMILY 6 (protein)
Unique Ligands	GOL, PEG, PGO, TRS

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5A6L \| pdb_00005a6l	Download File View File

High resolution structure of the thermostable glucuronoxylan endo-Beta-1, 4-xylanase, CtXyn30A, from Clostridium thermocellum with two xylobiose units bound

Freire, F., Verma, A.K., Bule, P., Goyal, A., Fontes, C.M.G.A., Najmudin, S.

(2016) Acta Crystallogr D Biol Crystallogr 72: 1162

Released	2016-10-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Acetivibrio thermocellus
Macromolecule	CARBOHYDRATE BINDING FAMILY 6 (protein)
Unique Ligands	PEG, PO4
Unique branched monosaccharides	XYP

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5A6M \| pdb_00005a6m	Download File View File

Determining the specificities of the catalytic site from the very high resolution structure of the thermostable glucuronoxylan endo-Beta-1, 4-xylanase, CtXyn30A, from Clostridium thermocellum with a xylotetraose bound

Freire, F., Verma, A.K., Bule, P., Goyal, A., Fontes, C.M.G.A., Najmudin, S.

(2016) Acta Crystallogr D Biol Crystallogr 72: 1162

Released	2016-10-19
Method	X-RAY DIFFRACTION 1.17 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	CARBOHYDRATE BINDING FAMILY 6 (protein)
Unique Ligands	PEG, PO4
Unique branched monosaccharides	XYP, XYS

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7ZJP \| pdb_00007zjp	Download File View File

Optimization of TEAD P-Site Binding Fragment Hit into In Vivo Active Lead MSC-4106

Freire, F., Heinrich, T., Petersson, C., Schneider, R., Garg, S., Schwarz, D., Gunera, J., Seshire, A., Koetzner, L., Schlesiger, S., Musil, D., Schilke, H., Doerfel, B., Diehl, P., Boepple, P., Lemos, A.R., Sousa, P.M.F., Freire, F., Bandeiras, T.M., Carswell, E., Pearson, N., Sirohi, S., Hooker, M., Trivier, E., Broome, R., Balsiger, A., Crowden, A., Dillon, C., Wienke, D.

(2022) J Med Chem 65: 9206-9229

Released	2022-07-13
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional enhancer factor TEF-1 (protein)
Unique Ligands	JJU, SO4

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9FWW \| pdb_00009fww	Download File View File

Human NKp30 in complex with a VHH variant

Musil, D., Freire, F.

(2024) Protein Sci 33: e5176-e5176

Released	2024-10-30
Method	X-RAY DIFFRACTION 1.844 Å
Organisms	Homo sapiens
Macromolecule	Natural cytotoxicity triggering receptor 3 (protein) VHH (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, NAG

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9FXF \| pdb_00009fxf	Download File View File

VHH variant adression natural cytotoxicity triggering receptor 3

Musil, D., Freire, F.

(2024) Protein Sci 33: e5176-e5176

Released	2024-10-30
Method	X-RAY DIFFRACTION 1.067 Å
Organisms	Homo sapiens
Macromolecule	VHH (protein)
Unique Ligands	12H, PO4

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9FZA \| pdb_00009fza	Download File View File

TEAD1/YAP in complex with a reversible inhibitor N-[(4-phenoxyphenyl)methyl]imidazo[1,2-a]pyridine-3-carboxamide

Musil, D., Freire, F.

(2024) Bioorg Med Chem Lett 114: 129981-129981

Released	2024-10-16
Method	X-RAY DIFFRACTION 2.214 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional coactivator YAP1 (protein) Transcriptional enhancer factor TEF-1 (protein)
Unique Ligands	A1IHH, CL

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9GAX \| pdb_00009gax	Download File View File

TEAD1 in complex with a reversible inhibitor N-[(1S)-2-hydroxy-1-(1-methyl-1H-pyrazol-3-yl)ethyl]-2-methyl-8-[4-(trifluoromethyl)phenyl]-2H,8H-pyrazolo[3,4-b]indole-5-carboxamide

Musil, D., Freire, F.

(2025) J Med Chem 68: 6149-6164

Released	2025-01-22
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional enhancer factor TEF-1 (protein)
Unique Ligands	A1IJL, GOL, SO4

1 to 22 of 22 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1ZNT | pdb_00001znt

1ZUV | pdb_00001zuv

1ZWU | pdb_00001zwu

4AYZ | pdb_00004ayz

4B0Y | pdb_00004b0y

4BWT | pdb_00004bwt

4BWU | pdb_00004bwu

4BXV | pdb_00004bxv

4CKQ | pdb_00004ckq

4UQ9 | pdb_00004uq9

4UQA | pdb_00004uqa

4UQB | pdb_00004uqb

4UQC | pdb_00004uqc

4UQD | pdb_00004uqd

4UQE | pdb_00004uqe

5A6L | pdb_00005a6l

5A6M | pdb_00005a6m

7ZJP | pdb_00007zjp

9FWW | pdb_00009fww

9FXF | pdb_00009fxf

9FZA | pdb_00009fza

9GAX | pdb_00009gax