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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Fourati, Z."

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This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Homo sapiens (11)
	Escherichia coli K-12 (1)

Taxonomy

	Eukaryota (11)
	Bacteria (1)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.5 - 2.0 (8)
	2.0 - 2.5 (2)
	2.5 - 3.0 (2)

Release Date

	2015 - 2019 (2)
	2020 - 2024 (10)

Enzyme Classification Name

Transferases (12)

Symmetry Type

	Cyclic (11)
	Asymmetric (1)

SCOP Classification

Alpha and beta proteins (a/b) (2)

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1 to 12 of 12 Structures

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5VWO \| pdb_00005vwo	Download File View File

Ornithine aminotransferase inactivated by (1R,3S,4S)-3-amino-4-fluorocyclopentane-1-carboxylic acid (FCP)

Mascarenhas, R., Liu, D., Le, H., Silverman, R.

(2017) Biochemistry 56: 4951-4961

Released	2017-08-30
Method	X-RAY DIFFRACTION 1.773 Å
Organisms	Homo sapiens
Macromolecule	Ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	9QJ

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5VWR \| pdb_00005vwr	Download File View File

E.coli Aspartate aminotransferase-(1R,3S,4S)-3-amino-4-fluorocyclopentane-1-carboxylic acid (FCP)-alpha-ketoglutarate

Mascarenhas, R., Liu, D., Le, H., Silverman, R.

(2017) Biochemistry 56: 4951-4961

Released	2017-09-13
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Escherichia coli K-12
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	GOL, PL6

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7LK0 \| pdb_00007lk0	Download File View File

Ornithine Aminotransferase (OAT) cocrystallized with its potent inhibitor - (S)-3-amino-4,4-difluorocyclopent-1-enecarboxylic acid (SS-1-148)

Butrin, A., Shen, S., Liu, D., Silverman, R.

(2021) J Am Chem Soc 143: 8689-8703

Released	2022-02-16
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Homo sapiens
Macromolecule	Ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	Y3D

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7LK1 \| pdb_00007lk1	Download File View File

Ornithine Aminotransferase (OAT) with its potent inhibitor - (S)-3-amino-4,4-difluorocyclopent-1-enecarboxylic acid (SS-1-148) - 1 Hour Soaking

Butrin, A., Shen, S., Liu, D., Silverman, R.

(2021) J Am Chem Soc 143: 8689-8703

Released	2022-02-16
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Homo sapiens
Macromolecule	Ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	Y37

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7LNM \| pdb_00007lnm	Download File View File

Ornithine Aminotransferase (OAT) cocrystallized with its inactivator - (1S,3S)-3-amino-4-(difluoromethylene)cyclopentene-1-carboxylic acid

Butrin, A., Catlin, D., Zhu, W., Liu, D., Silverman, R.

(2021) J Am Chem Soc 143: 8193-8207

Released	2021-08-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	Y7S

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7LOM \| pdb_00007lom	Download File View File

Ornithine Aminotransferase (OAT) soaked with its inactivator - (1S,3S)-3-amino-4-(difluoromethylene)cyclohexene-1-carboxylic acid

Butrin, A., Zhu, W., Liu, D., Silverman, R.

(2021) J Am Chem Soc 143: 8193-8207

Released	2021-08-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	THR, Y8P, YCD

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7LON \| pdb_00007lon	Download File View File

Ornithine Aminotransferase (OAT) cocrystallized with its inactivator - (1S,3S)-3-amino-4-(difluoromethylene)cyclohexene-1-carboxylic acid

Butrin, A., Zhu, W., Liu, D., Silverman, R.

(2021) J Am Chem Soc 143: 8193-8207

Released	2021-08-25
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	7QP, THR

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7TED \| pdb_00007ted	Download File View File

Human Ornithine Aminotransferase cocrystallized with its inhibitor, (S,E)-3-amino-4-(fluoromethylene)cyclopent-1-ene-1-carboxylate

Butrin, A., Zhu, W., Silverman, R., Liu, D.

(2022) J Am Chem Soc 144: 5629-5642

Released	2022-04-06
Method	X-RAY DIFFRACTION 2.63 Å
Organisms	Homo sapiens
Macromolecule	Ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	I1T, PLP

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7TEV \| pdb_00007tev	Download File View File

Human Ornithine Aminotransferase cocrystallized with its inhibitor, (3S,4R)-3-amino-4-(difluoromethyl)cyclopent-1-ene-1-carboxylate

Butrin, A., Zhu, W., Silverman, R., Liu, D.

(2022) J Am Chem Soc 144: 5629-5642

Released	2022-04-06
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Homo sapiens
Macromolecule	Ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	I1T

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7TFP \| pdb_00007tfp	Download File View File

Human Ornithine Aminotransferase cocrystallized with its inhibitor, (1S,3S)-3-amino-4-(difluoromethylene)cyclopentane-1-carboxylic acid.

Butrin, A., Zhu, W., Silverman, R., Liu, D.

(2022) J Am Chem Soc 144: 5629-5642

Released	2022-04-06
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Homo sapiens
Macromolecule	Ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	I2V, PLP

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8EZ1 \| pdb_00008ez1	Download File View File

Human Ornithine Aminotransferase (hOAT) co-crystallized with its inactivator 3-Amino-4-fluorocyclopentenecarboxylic Acid

Butrin, A., Shen, S., Silverman, R., Liu, D.

(2023) Molecules 28:

Released	2023-02-22
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Homo sapiens
Macromolecule	Ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	X8B, X8H

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8V9M \| pdb_00008v9m	Download File View File

Human Ornithine Aminotransferase cocrystallized with its inhibitor, (R)-3-amino-5,5-difluorocyclohex-1-ene-1-carboxylic acid.

Vargas, A.L., Devitt, A., Kaley, N., Silverman, R., Liu, D.

(2024) ACS Chem Biol 19: 1066-1081

Released	2024-05-08
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Homo sapiens
Macromolecule	Ornithine aminotransferase, mitochondrial (protein)
Unique Ligands	GOL, YR5

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5VWO | pdb_00005vwo

Ornithine aminotransferase inactivated by (1R,3S,4S)-3-amino-4-fluorocyclopentane-1-carboxylic acid (FCP)

5VWR | pdb_00005vwr

E.coli Aspartate aminotransferase-(1R,3S,4S)-3-amino-4-fluorocyclopentane-1-carboxylic acid (FCP)-alpha-ketoglutarate

7LK0 | pdb_00007lk0

Ornithine Aminotransferase (OAT) cocrystallized with its potent inhibitor - (S)-3-amino-4,4-difluorocyclopent-1-enecarboxylic acid (SS-1-148)

7LK1 | pdb_00007lk1

Ornithine Aminotransferase (OAT) with its potent inhibitor - (S)-3-amino-4,4-difluorocyclopent-1-enecarboxylic acid (SS-1-148) - 1 Hour Soaking

7LNM | pdb_00007lnm

Ornithine Aminotransferase (OAT) cocrystallized with its inactivator - (1S,3S)-3-amino-4-(difluoromethylene)cyclopentene-1-carboxylic acid

7LOM | pdb_00007lom

Ornithine Aminotransferase (OAT) soaked with its inactivator - (1S,3S)-3-amino-4-(difluoromethylene)cyclohexene-1-carboxylic acid

7LON | pdb_00007lon

Ornithine Aminotransferase (OAT) cocrystallized with its inactivator - (1S,3S)-3-amino-4-(difluoromethylene)cyclohexene-1-carboxylic acid

7TED | pdb_00007ted

Human Ornithine Aminotransferase cocrystallized with its inhibitor, (S,E)-3-amino-4-(fluoromethylene)cyclopent-1-ene-1-carboxylate

7TEV | pdb_00007tev

Human Ornithine Aminotransferase cocrystallized with its inhibitor, (3S,4R)-3-amino-4-(difluoromethyl)cyclopent-1-ene-1-carboxylate

7TFP | pdb_00007tfp

Human Ornithine Aminotransferase cocrystallized with its inhibitor, (1S,3S)-3-amino-4-(difluoromethylene)cyclopentane-1-carboxylic acid.

8EZ1 | pdb_00008ez1

Human Ornithine Aminotransferase (hOAT) co-crystallized with its inactivator 3-Amino-4-fluorocyclopentenecarboxylic Acid

8V9M | pdb_00008v9m

Human Ornithine Aminotransferase cocrystallized with its inhibitor, (R)-3-amino-5,5-difluorocyclohex-1-ene-1-carboxylic acid.

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Scientific Name of Source Organism

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Experimental Method

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Symmetry Type

SCOP Classification

5VWO | pdb_00005vwo

5VWR | pdb_00005vwr

7LK0 | pdb_00007lk0

7LK1 | pdb_00007lk1

7LNM | pdb_00007lnm

7LOM | pdb_00007lom

7LON | pdb_00007lon

7TED | pdb_00007ted

7TEV | pdb_00007tev

7TFP | pdb_00007tfp

8EZ1 | pdb_00008ez1

8V9M | pdb_00008v9m