8Z9D

cryo-EM structure of PSII-LHCII megacomplex from spinach

• PDB DOI: https://doi.org/10.2210/pdb8Z9D/pdb
• EM Map EMD-39860: EMDB EMDataResource

• Classification: PHOTOSYNTHESIS
• Organism(s): Spinacia oleracea
• Mutation(s): No 


• Deposited: 2024-04-23 Released: 2024-11-13 
• Deposition Author(s): Shan, J.Y., Liu, Z.F.
• Funding Organization(s): Chinese Academy of Sciences

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.22 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Architecture and functional regulation of a plant PSII-LHCII megacomplex

Shan, J.Y., Liu, Z.F.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Hetero 112-mer - A16B4C4D4E4F4G4H4I4J4K4L4M4N4O4P4Q4R4S4T4U4V4W2X2Y2Z2a2b2 Pseudo Symmetry: Cyclic - C2  (Explore in 3D)
Pseudo Stoichiometry: Hetero 112-mer - A26B20C8D4E4F4G4H4I4J4K4L4M4N4O4P4Q2R2S2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 2,986.19 kDa 
• Atom Count: 171,299 
• Modelled Residue Count: 17,260 
• Deposited Residue Count: 21,780 
• Unique protein chains: 28

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Photosystem II protein D1	A, UB [auth AA], UC [auth Aa], WA [auth a]	351	Spinacia oleracea	Mutation(s): 0  EC: 1.10.3.9
UniProt
Find proteins for P69560 (Spinacia oleracea) Explore P69560  Go to UniProtKB:  P69560

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Oxygen-evolving enhancer protein 1, chloroplastic	B [auth Oo], JC [auth OO], KB [auth o], LA [auth O]	332	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for P12359 (Spinacia oleracea) Explore P12359  Go to UniProtKB:  P12359

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Chlorophyll a-b binding protein, chloroplastic	C [auth Rr], LB [auth r], MC [auth RR], OA [auth R]	286	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for A0A9R0HRF2 (Spinacia oleracea) Explore A0A9R0HRF2  Go to UniProtKB:  A0A9R0HRF2

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Chlorophyll a-b binding protein, chloroplastic	D [auth Ss], MB [auth s], NC [auth SS], PA [auth S]	295	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for A0A9R0IJF3 (Spinacia oleracea) Explore A0A9R0IJF3  Go to UniProtKB:  A0A9R0IJF3

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Photosystem II reaction center protein T	E [auth Tt], NB [auth t], OC [auth TT], QA [auth T]	33	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for P61840 (Spinacia oleracea) Explore P61840  Go to UniProtKB:  P61840

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Photosystem II 5 kDa protein, chloroplastic	F [auth Uu], OB [auth u], PC [auth UU], RA [auth U]	99	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for A0A9R0J8H2 (Spinacia oleracea) Explore A0A9R0J8H2  Go to UniProtKB:  A0A9R0J8H2

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
Photosystem II reaction center W protein, chloroplastic	G [auth Ww], PB [auth w], QC [auth WW], SA [auth W]	137	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for Q41387 (Spinacia oleracea) Explore Q41387  Go to UniProtKB:  Q41387

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
Photosystem II reaction center X protein, chloroplastic	H [auth Xx], QB [auth x], RC [auth XX], TA [auth X]	117	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for A0A9R0JQ89 (Spinacia oleracea) Explore A0A9R0JQ89  Go to UniProtKB:  A0A9R0JQ89

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
Chlorophyll a-b binding protein, chloroplastic	AD [auth Gg], BC [auth GG], CB [auth g], DA [auth G], HD [auth Nn], I [auth Yy], IC [auth NN], JB [auth n], KA [auth N], RB [auth y], SC [auth YY], UA [auth Y]	267	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for A0A9R0JBE4 (Spinacia oleracea) Explore A0A9R0JBE4  Go to UniProtKB:  A0A9R0JBE4

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
Photosystem II reaction center protein Z	J [auth Zz], SB [auth z], TC [auth ZZ], VA [auth Z]	62	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for Q9M3M6 (Spinacia oleracea) Explore Q9M3M6  Go to UniProtKB:  Q9M3M6

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
Chlorophyll a-b binding protein CP24, chloroplastic	K [auth 44], TB [auth 4]	259	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for P36494 (Spinacia oleracea) Explore P36494  Go to UniProtKB:  P36494

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
Oxygen-evolving enhancer protein 2, chloroplastic	KC [auth PP], L [auth Pp], MA [auth P], N [auth p]	267	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for P12302 (Spinacia oleracea) Explore P12302  Go to UniProtKB:  P12302

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
Oxygen-evolving enhancer protein 3, chloroplastic	LC [auth QQ], M [auth Qq], NA [auth Q], O [auth q]	232	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for P12301 (Spinacia oleracea) Explore P12301  Go to UniProtKB:  P12301

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
Chlorophyll a-b binding protein, chloroplastic	P [auth 11], Q [auth 22], S [auth 1], T [auth 2]	267	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for A4F3R4 (Spinacia oleracea) Explore A4F3R4  Go to UniProtKB:  A4F3R4

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
Chlorophyll a-b binding protein, chloroplastic	R [auth 33], U [auth 3]	264	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for A0A9R0J656 (Spinacia oleracea) Explore A0A9R0J656  Go to UniProtKB:  A0A9R0J656

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
Photosystem II 10 kDa polypeptide, chloroplastic	V [auth 0], X [auth 00]	140	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for P10690 (Spinacia oleracea) Explore P10690  Go to UniProtKB:  P10690

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
Photosystem II reaction center proteins PsbY, chloroplastic	W [auth 5], Y [auth 55]	199	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for P80470 (Spinacia oleracea) Explore P80470  Go to UniProtKB:  P80470

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
Photosystem II CP43 reaction center protein	WB [auth CC], WC [auth Cc], YA [auth c], Z [auth C]	473	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for P06003 (Spinacia oleracea) Explore P06003  Go to UniProtKB:  P06003

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
Photosystem II D2 protein	AA [auth D], XB [auth DD], XC [auth Dd], ZA [auth d]	352	Spinacia oleracea	Mutation(s): 0  EC: 1.10.3.9
UniProt
Find proteins for P06005 (Spinacia oleracea) Explore P06005  Go to UniProtKB:  P06005

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome b559 subunit alpha	AB [auth e], BA [auth E], YC [auth Ee], ZB [auth EE]	83	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for P69383 (Spinacia oleracea) Explore P69383  Go to UniProtKB:  P69383

Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome b559 subunit beta	AC [auth FF], BB [auth f], CA [auth F], ZC [auth Ff]	39	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for P60128 (Spinacia oleracea) Explore P60128  Go to UniProtKB:  P60128

Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
Photosystem II reaction center protein H	BD [auth Hh], CC [auth HH], DB [auth h], EA [auth H]	73	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for P05146 (Spinacia oleracea) Explore P05146  Go to UniProtKB:  P05146

Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
Photosystem II reaction center protein I	CD [auth Ii], DC [auth II], EB [auth i], FA [auth I]	36	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for P62103 (Spinacia oleracea) Explore P62103  Go to UniProtKB:  P62103

Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
Photosystem II reaction center protein J	DD [auth Jj], EC [auth JJ], FB [auth j], GA [auth J]	40	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for Q9M3L2 (Spinacia oleracea) Explore Q9M3L2  Go to UniProtKB:  Q9M3L2

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
Photosystem II reaction center protein K	ED [auth Kk], FC [auth KK], GB [auth k], HA [auth K]	59	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for P12163 (Spinacia oleracea) Explore P12163  Go to UniProtKB:  P12163

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
Photosystem II reaction center protein L	FD [auth Ll], GC [auth LL], HB [auth l], IA [auth L]	38	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for P60150 (Spinacia oleracea) Explore P60150  Go to UniProtKB:  P60150

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
Photosystem II reaction center protein M	GD [auth Mm], HC [auth MM], IB [auth m], JA [auth M]	34	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for P62112 (Spinacia oleracea) Explore P62112  Go to UniProtKB:  P62112

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
Photosystem II CP47 reaction center protein	VB [auth BB], VC [auth Bb], XA [auth b], YB [auth B]	508	Spinacia oleracea	Mutation(s): 0
UniProt
Find proteins for P04160 (Spinacia oleracea) Explore P04160  Go to UniProtKB:  P04160

Small Molecules

Ligands 18 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
DGD	AR [auth c], BX [auth BB], CL [auth D], CX [auth BB], DS [auth h], DX [auth BB], FDA [auth Aa], GFA [auth Cc], HFA [auth Cc], KY [auth B], LGA [auth Hh], MY [auth B], NK [auth C], NP [auth a], OK [auth C], RK [auth C], VX [auth CC], WX [auth CC], ZQ [auth c], ZX [auth CC]	DIGALACTOSYL DIACYL GLYCEROL (DGDG) C51 H96 O15 LDQFLSUQYHBXSX-HXXRYREZSA-N
CHL	ACA [auth SS], AGA [auth Gg], AHA [auth Nn], BCA [auth SS], BE [auth Rr], BG [auth 44], BH [auth 22], BN [auth R], CE [auth Rr], CG [auth 44], CN [auth R], CV [auth 4], DE [auth Rr], DG [auth 44], DN [auth R], EF [auth Yy], EG [auth 44], EHA [auth Nn], EI [auth 1], EM [auth N], FH [auth 22], FHA [auth Nn], FL [auth G], FT [auth r], GH [auth 22], GHA [auth Nn], GJ [auth 3], GO [auth Y], GT [auth r], GV [auth 4], HBA [auth RR], HH [auth 22], HHA [auth Nn], HT [auth r], HV [auth 4], IBA [auth RR], IF [auth Yy], IH [auth 22], IHA [auth Nn], II [auth 1], IM [auth N], IV [auth 4], JBA [auth RR], JF [auth Yy], JI [auth 1], JL [auth G], JM [auth N], JR [auth g], JS [auth n], JU [auth y], JV [auth 4], KAA [auth NN], KF [auth Yy], KI [auth 1], KJ [auth 3], KL [auth G], KM [auth N], KO [auth Y], KZ [auth GG], LF [auth Yy], LI [auth 1], LJ [auth 3], LL [auth G], LM [auth N], LO [auth Y], MF [auth Yy], MJ [auth 3], ML [auth G], MM [auth N], MO [auth Y], NCA [auth YY], NG [auth 11], NJ [auth 3], NL [auth G], NO [auth Y], NR [auth g], NS [auth n], NU [auth y], OAA [auth NN], OE [auth Ss], OO [auth Y], OR [auth g], OS [auth n], OU [auth y], OZ [auth GG], PAA [auth NN], PN [auth S], PR [auth g], PS [auth n], PU [auth y], PZ [auth GG], QAA [auth NN], QH [auth 33], QR [auth g], QS [auth n], QU [auth y], QZ [auth GG], RAA [auth NN], RCA [auth YY], RG [auth 11], RR [auth g], RS [auth n], RT [auth s], RU [auth y], RZ [auth GG], SAA [auth NN], SCA [auth YY], SE [auth Ss], SFA [auth Gg], SG [auth 11], SI [auth 2], SZ [auth GG], TCA [auth YY], TE [auth Ss], TG [auth 11], TN [auth S], UCA [auth YY], UE [auth Ss], UG [auth 11], UH [auth 33], UN [auth S], VBA [auth SS], VCA [auth YY], VH [auth 33], VN [auth S], VT [auth s], WFA [auth Gg], WH [auth 33], WI [auth 2], WT [auth s], XF [auth 44], XFA [auth Gg], XH [auth 33], XI [auth 2], XT [auth s], YFA [auth Gg], YI [auth 2], ZBA [auth SS], ZFA [auth Gg], ZI [auth 2]	CHLOROPHYLL B C55 H70 Mg N4 O6 MWVCRINOIIOUAU-UYSPMESUSA-M
CLA	ADA [auth YY], AE [auth Rr], AEA [auth Bb], AF [auth Ss], AFA [auth Cc], AG [auth 44], AI [auth 33], AJ [auth 2], AK [auth C], AN [auth R], AO [auth S], AQ [auth b], AU [auth s], BEA [auth Bb], BFA [auth Cc], BGA [auth Gg], BHA [auth Nn], BI [auth 33], BJ [auth 2], BK [auth C], BO [auth S], BQ [auth b], BT [auth r], BU [auth s], BY [auth DD], BZ [auth B], CCA [auth SS], CEA [auth Bb], CFA [auth Cc], CGA [auth Gg], CH [auth 22], CHA [auth Nn], CI [auth 33], CJ [auth 2], CK [auth C], CQ [auth b], CR [auth d], CT [auth r], CU [auth s], CZ [auth B], DCA [auth SS], DEA [auth Bb], DGA [auth Gg], DH [auth 22], DHA [auth Nn], DJ [auth 2], DK [auth C], DP [auth a], DQ [auth b], DR [auth d], DT [auth r], DU [auth s], DV [auth 4], DY [auth DD], DZ [auth B], EBA [auth RR], ECA [auth SS], EE [auth Rr], EEA [auth Bb], EGA [auth Gg], EH [auth 22], EJ [auth 2], EK [auth C], EN [auth R], EP [auth a], ET [auth r], EV [auth 4], EY [auth DD], EZ [auth B], FBA [auth RR], FCA [auth SS], FE [auth Rr], FEA [auth Bb], FF [auth Yy], FG [auth 44], FGA [auth Gg], FI [auth 1], FK [auth C], FM [auth N], FN [auth R], FO [auth X], FP [auth a], FV [auth 4], FW [auth BB], FX [auth CC], FZ [auth B], GBA [auth RR], GCA [auth SS], GE [auth Rr], GEA [auth Bb], GF [auth Yy], GG [auth 44], GI [auth 1], GK [auth C], GL [auth G], GM [auth N], GN [auth R], GW [auth BB], GX [auth CC], GZ [auth B], HCA [auth SS], HE [auth Rr], HEA [auth Bb], HF [auth Yy], HG [auth 44], HI [auth 1], HJ [auth 3], HK [auth C], HL [auth G], HM [auth N], HN [auth R], HO [auth Y], HW [auth BB], HX [auth CC], HZ [auth B], IE [auth Rr], IEA [auth Bb], IFA [auth Dd], IJ [auth 3], IK [auth C], IL [auth G], IN [auth R], IO [auth Y], IP [auth a], IT [auth r], IW [auth BB], IX [auth CC], JDA [auth Aa], JE [auth Rr], JFA [auth Dd], JH [auth 22], JJ [auth 3], JK [auth C], JN [auth R], JO [auth Y], JQ [auth c], JT [auth r], JW [auth BB], JX [auth CC], KBA [auth RR], KDA [auth Aa], KH [auth 22], KN [auth R], KQ [auth c], KR [auth g], KS [auth n], KT [auth r], KU [auth y], KV [auth 4], KW [auth BB], KX [auth CC], LAA [auth NN], LBA [auth RR], LCA [auth XX], LDA [auth Aa], LG [auth 44], LH [auth 22], LQ [auth c], LR [auth g], LS [auth n], LT [auth r], LU [auth y], LV [auth 4], LW [auth BB], LX [auth CC], LZ [auth GG], MAA [auth NN], MBA [auth RR], MD [auth A], MH [auth 22], MI [auth 1], MQ [auth c], MR [auth g], MS [auth n], MT [auth r], MU [auth y], MV [auth 4], MW [auth BB], MX [auth CC], MZ [auth GG], NAA [auth NN], NBA [auth RR], ND [auth A], NF [auth Yy], NH [auth 22], NI [auth 1], NM [auth N], NQ [auth c], NT [auth r], NW [auth BB], NX [auth CC], NY [auth B], NZ [auth GG], OBA [auth RR], OCA [auth YY], ODA [auth Aa], OF [auth Yy], OG [auth 11], OI [auth 1], OJ [auth 3], OL [auth G], OM [auth N], OP [auth b], OQ [auth c], OW [auth BB], OX [auth CC], OY [auth B], PBA [auth RR], PCA [auth YY], PD [auth A], PE [auth Ss], PF [auth Yy], PG [auth 11], PI [auth 1], PJ [auth 3], PL [auth G], PM [auth N], PO [auth Y], PP [auth b], PQ [auth c], PW [auth BB], PX [auth CC], PY [auth B], QBA [auth RR], QCA [auth YY], QE [auth Ss], QEA [auth Cc], QF [auth Yy], QG [auth 11], QGA [auth Nn], QI [auth 1], QJ [auth 3], QL [auth G], QM [auth N], QN [auth S], QO [auth Y], QP [auth b], QQ [auth c], QW [auth BB], QX [auth CC], QY [auth B], RE [auth Ss], REA [auth Cc], RF [auth Yy], RGA [auth Nn], RH [auth 33], RJ [auth 3], RL [auth G], RM [auth N], RN [auth S], RO [auth Y], RP [auth b], RQ [auth c], RW [auth BB], RX [auth CC], RY [auth B], SEA [auth Cc], SGA [auth Nn], SH [auth 33], SJ [auth 3], SK [auth D], SL [auth G], SN [auth S], SO [auth Y], SP [auth b], SQ [auth c], SR [auth g], SS [auth n], ST [auth s], SU [auth y], SW [auth BB], SY [auth B], TAA [auth NN], TDA [auth Bb], TEA [auth Cc], TFA [auth Gg], TGA [auth Nn], TH [auth 33], TI [auth 2], TO [auth Y], TP [auth b], TQ [auth c], TR [auth g], TS [auth n], TT [auth s], TU [auth y], TW [auth BB], TY [auth B], TZ [auth GG], UAA [auth NN], UDA [auth Bb], UEA [auth Cc], UFA [auth Gg], UGA [auth Nn], UI [auth 2], UP [auth b], UQ [auth c], UR [auth g], US [auth n], UT [auth s], UU [auth y], UV [auth AA], UY [auth B], UZ [auth GG], VAA [auth NN], VDA [auth Bb], VE [auth Ss], VEA [auth Cc], VFA [auth Gg], VG [auth 11], VI [auth 2], VK [auth D], VP [auth b], VQ [auth c], VR [auth g], VS [auth n], VU [auth y], VV [auth AA], VZ [auth GG], WAA [auth NN], WBA [auth SS], WCA [auth YY], WDA [auth Bb], WE [auth Ss], WEA [auth Cc], WG [auth 11], WK [auth D], WN [auth S], WP [auth b], WR [auth g], WS [auth n], WU [auth y], WZ [auth GG], XAA [auth NN], XBA [auth SS], XCA [auth YY], XD [auth Rr], XDA [auth Bb], XE [auth Ss], XEA [auth Cc], XG [auth 11], XJ [auth C], XM [auth R], XN [auth S], XP [auth b], XV [auth AA], XZ [auth GG], YBA [auth SS], YCA [auth YY], YD [auth Rr], YDA [auth Bb], YE [auth Ss], YEA [auth Cc], YF [auth 44], YG [auth 11], YH [auth 33], YJ [auth C], YM [auth R], YN [auth S], YP [auth b], YT [auth s], ZCA [auth YY], ZD [auth Rr], ZDA [auth Bb], ZE [auth Ss], ZEA [auth Cc], ZF [auth 44], ZG [auth 11], ZH [auth 33], ZJ [auth C], ZM [auth R], ZN [auth S], ZP [auth b], ZT [auth s]	CHLOROPHYLL A C55 H72 Mg N4 O5 ATNHDLDRLWWWCB-AENOIHSZSA-M
PHO	CY [auth DD], GP [auth a], HP [auth a], MDA [auth Aa], NDA [auth Aa], OD [auth A], TK [auth D], WV [auth AA]	PHEOPHYTIN A C55 H74 N4 O5 CQIKWXUXPNUNDV-RCBXBCQGSA-N
SQD	AZ [auth B], BW [auth AA], CM [auth L], DM [auth L], EX [auth CC], HS [auth l], IAA [auth LL], JAA [auth LL], LY [auth B], NGA [auth Ll], RDA [auth Aa], TD [auth A], VJ [auth C], ZW [auth BB]	1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL C41 H78 O12 S RVUUQPKXGDTQPG-JUDHQOGESA-N
LMG	BR [auth c], EL [auth F], EO [auth W], ES [auth j], EW [auth AA], HQ [auth b], IQ [auth b], IS [auth m], JY [auth DD], KCA [auth WW], KP [auth a], MEA [auth Bb], NEA [auth Bb], OEA [auth Cc], PFA [auth Dd], PGA [auth Mm], PK [auth C], QDA [auth Aa], WD [auth A], XW [auth BB], XX [auth CC], YY [auth B]	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE C45 H86 O10 DCLTVZLYPPIIID-CVELTQQQSA-N
PL9 (Subject of Investigation/LOI)	FR [auth d], GY [auth DD], LFA [auth Dd], RD [auth A], YK [auth D], ZV [auth AA]	2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE C53 H80 O2 FKUYMLZIRPABFK-UHFFFAOYSA-N
LHG	AH [auth 11], AL [auth D], AM [auth K], AS [auth g], AT [auth n], AV [auth y], AW [auth AA], AX [auth BB], AY [auth CC], BAA [auth GG], BL [auth D], BV [auth 4], CBA [auth NN], DAA [auth II], DF [auth Ss], DI [auth 33], DW [auth AA], EAA [auth JJ], EDA [auth YY], FAA [auth KK], GR [auth d], GS [auth l], GU [auth s], HR [auth d], HY [auth DD], IY [auth DD], IZ [auth EE], JGA [auth Gg], KG [auth 44], MFA [auth Dd], MG [auth 44], MP [auth a], NE [auth Rr], NFA [auth Dd], OFA [auth Dd], OGA [auth Ll], PH [auth 22], PV [auth 4], QK [auth C], QT [auth r], RI [auth 1], SD [auth A], TJ [auth 3], UBA [auth SS], UD [auth A], UJ [auth 0], VD [auth A], VF [auth Yy], WL [auth G], WM [auth N], XO [auth Y], YX [auth CC], ZGA [auth Nn], ZK [auth D], ZL [auth J]	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE C38 H75 O10 P BIABMEZBCHDPBV-MPQUPPDSSA-N
HEM	DL [auth E], IR [auth e], JZ [auth EE], QFA [auth Ee]	PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L
NEX	BBA [auth NN], DDA [auth YY], IGA [auth Gg], ME [auth Rr], NN [auth R], TBA [auth RR], UF [auth Yy], VM [auth N], WO [auth Y], YGA [auth Nn], YO [auth Y], ZR [auth g], ZS [auth n], ZU [auth y]	(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL C40 H56 O4 PGYAYSRVSAJXTE-OQASCVKESA-N
XAT	AAA [auth GG], ABA [auth NN], BS [auth g], CAA [auth GG], HU [auth y], IU [auth y], JG [auth 44], LE [auth Rr], MN [auth R], OV [auth 4], PT [auth r], RFA [auth Gg], SBA [auth RR], UM [auth N], VL [auth G], WF [auth Yy], XGA [auth Nn], XL [auth G]	(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL C40 H56 O4 SZCBXWMUOPQSOX-WVJDLNGLSA-N
LUT	BDA [auth YY], BF [auth Ss], CDA [auth YY], CF [auth Ss], CO [auth S], EU [auth s], FJ [auth 2], FU [auth s], GGA [auth Gg], HGA [auth Gg], ICA [auth SS], IG [auth 44], KE [auth Rr], LN [auth R], NV [auth 4], OH [auth 22], OT [auth r], RBA [auth RR], SF [auth Yy], SM [auth N], TF [auth Yy], TL [auth G], TM [auth N], UL [auth G], UO [auth Y], VGA [auth Nn], VO [auth Y], WGA [auth Nn], XR [auth g], XS [auth n], XU [auth y], YAA [auth NN], YR [auth g], YS [auth n], YU [auth y], YZ [auth GG], ZAA [auth NN], ZZ [auth GG]	(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL C40 H56 O2 KBPHJBAIARWVSC-NSIPBSJQSA-N
BCR	BM [auth K], CS [auth h], DFA [auth Cc], DO [auth T], EFA [auth Cc], EQ [auth b], ER [auth d], FFA [auth Cc], FQ [auth b], FS [auth k], FY [auth DD], GQ [auth b], HAA [auth KK], JCA [auth TT], JEA [auth Bb], JP [auth a], KEA [auth Bb], KFA [auth Dd], KGA [auth Hh], KK [auth C], LEA [auth Bb], LK [auth C], MCA [auth XX], MGA [auth Kk], MK [auth C], PDA [auth Aa], QD [auth A], SX [auth CC], TX [auth CC], UW [auth BB], UX [auth CC], VW [auth BB], VY [auth B], WQ [auth c], WW [auth BB], WY [auth B], XK [auth D], XQ [auth c], XY [auth B], YL [auth H], YQ [auth c], YV [auth AA], YW [auth BB], ZY [auth B]	BETA-CAROTENE C40 H56 OENHQHLEOONYIE-JLTXGRSLSA-N
LMU	DBA [auth RR], GAA [auth KK], ON [auth R], WJ [auth C]	DODECYL-ALPHA-D-MALTOSIDE C24 H46 O11 NLEBIOOXCVAHBD-YHBSTRCHSA-N
OEX	ID [auth A], PEA [auth Cc], QV [auth AA], ZO [auth a]	CA-MN4-O5 CLUSTER Ca Mn4 O5 SEXWDHMBWJEXOJ-UHFFFAOYSA-N
BCT	CW [auth AA], LP [auth a], SDA [auth Aa], UK [auth D]	BICARBONATE ION C H O3 BVKZGUZCCUSVTD-UHFFFAOYSA-M
FE2	AP [auth a], GDA [auth Aa], JD [auth A], RV [auth AA]	FE (II) ION Fe CWYNVVGOOAEACU-UHFFFAOYSA-N
CL	BP [auth a], CP [auth a], HDA [auth Aa], IDA [auth Aa], KD [auth A], LD [auth A], SV [auth AA], TV [auth AA]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.22 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-11-13 
Deposition Author(s): Shan, J.Y., Liu, Z.F.

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Funding Organization	Location	Grant Number
Chinese Academy of Sciences	China	--

Revision History  

• Version 1.0: 2024-11-13
  Type: Initial release
  
• Version 1.1: 2024-11-27
  Changes: Data collection