Take the EDMAPS.rcsb.org Survey

03/29 

Please take this brief survey about usage of DSN6-formatted data files.

In fall of 2024, electron density map coefficients will be available in the public PDB archive for all X-ray structures. These map coefficients will be the same as used in wwPDB Validation Reports.

These files will replace the electron density maps and combined map coefficient files distributed by RCSB PDB and used by the NGLviewer at RCSB.org. These data are calculated using publicly-available coordinate files and structure factor files and offered in DSN6 format. RCSB PDB plans to shutdown the NGL viewer by July, 2024 and will no longer need these data (announcement).

RCSB PDB is asking software developers and data end users who may be using the current DSN6-formatted data files to take this brief survey (<5 minutes). Your responses will help us gauge the current use of the EDMAPS service and to help transition users to alternative data sources.

All survey responses are greatly appreciated! The survey will close May 1, 2024.

News Index

• 10/31 wwPDB News: Deprecation of FTP File Download Protocol on November 1, 2024

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• 10/08 wwPDB News: Annotation of Protein Modifications in the PDB

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• 09/23 Applications Open for Director

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• 09/17 Poster Prize Awarded at ACA 2024

• 09/17 wwPDB News: Deprecation of FTP File Download Protocol on November 1, 2024

• 09/17 Deprecation of ligand model coordinates in MOL2/SDF format starting Dec 10

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• 09/08 PDB-101 Focus: Peak Performance

• 09/03 Poster Prize Awarded at ISMB 2024

• 08/28 wwPDB News: Biocurator Milestone: >10,000 Depositions Processed

• 08/27 Paper Published: Exploring protein 3D similarities via comprehensive structural alignments

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• 06/11 PDB-101 Focus: Peak Performance

• 06/06 wwPDB News: Biocurator Milestone: >10,000 Depositions Processed

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• 05/09 Announcement: EDMAPS.rcsb.org Shutdown

• 05/08 wwPDB News: Poster Prize Awarded at DiscoverBMB

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• 04/30 Annual Report Published

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• 04/16 Spring Newsletter Published

• 04/14 Paper Published: Folding paper models of biostructures for outreach and education

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• 04/01 Paper Published on NMR Restraint Validation

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• 03/17 Paper Published: Visualizing groups of PDB structures and CSMs

• 03/12 wwPDB News: Paper Published on CryoEM Archiving and Validation Recommendations

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• 03/06 wwPDB News: Poster Prize Awarded at The Biophysical Society Meeting

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• 02/25 Register for the March 28 Office Hour to Ask A Biocurator

• 02/23 wwPDB Preprint Published on NMR Restraint Validation

• 02/20 wwPDB Preprint Published on CryoEM Archiving and Validation Recommendations

• 02/16 PDB-101 Focus: Peak Performance

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• 01/08 wwPDB News: Resources for Supporting the Extended PDB ID Format (pdb_00001abc)

• 01/08 Winter Newsletter Published

• 01/07 Applications Open for Director

• 01/04 Top Molecules of the Month in 2023

• 01/03 wwPDB News: Time-stamped Copies of PDB and EMDB Archives