5VYP | pdb_00005vyp


PIO: [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate

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PIO is a Ligand Of Interest in 5VYP designated by the RCSB
Best-fitted instance in this entry
Other instances in this entry
Best-fitted instance in this entry
Best-fitted PDB instances with same target (top 5)
Best-fitted instance in this entry
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5VYP_PIO_T_101 76% 41% 0.08 0.9641.19 1.04 6 340100%1
5VYP_PIO_R_101 72% 41% 0.09 0.9611.21 1.03 7 340100%1
5VYP_PIO_C_101 68% 41% 0.094 0.9521.2 1.03 6 370100%1
5VYP_PIO_E_101 66% 42% 0.094 0.9421.19 0.99 6 310100%1
5VYP_PIO_N_101 65% 42% 0.098 0.9431.2 0.97 6 240100%1
5VYP_PIO_M_101 65% 40% 0.093 0.9341.2 1.05 6 230100%1
5VYP_PIO_U_101 65% 40% 0.099 0.9441.21 1.04 7 330100%1
5VYP_PIO_B_101 65% 39% 0.097 0.941.21 1.09 6 230100%1
5VYP_PIO_J_101 64% 40% 0.106 0.9511.2 1.05 6 350100%1
5VYP_PIO_H_101 63% 41% 0.099 0.9371.22 1.02 7 310100%1
5VYP_PIO_Q_101 63% 41% 0.099 0.9371.19 1.04 6 210100%1
5VYP_PIO_O_101 62% 40% 0.107 0.9431.21 1.04 7 350100%1
5VYP_PIO_S_101 61% 38% 0.107 0.941.2 1.19 7 320100%1
5VYP_PIO_G_101 61% 41% 0.107 0.9381.21 1.03 6 220100%1
5VYP_PIO_F_101 60% 40% 0.105 0.9331.2 1.05 6 350100%1
5VYP_PIO_A_101 60% 41% 0.108 0.9371.2 1.04 6 220100%1
5VYP_PIO_D_101 59% 40% 0.109 0.9321.21 1.04 6 370100%1
5VYP_PIO_V_101 58% 40% 0.114 0.9371.2 1.05 6 270100%1
5VYP_PIO_I_101 58% 42% 0.112 0.9331.19 0.99 7 320100%1
5VYP_PIO_W_101 57% 39% 0.108 0.9221.23 1.11 6 360100%1
5VYP_PIO_P_101 55% 41% 0.114 0.921.2 1.03 6 220100%1
5VYP_PIO_X_101 51% 40% 0.119 0.9091.19 1.08 6 240100%1
5VYP_PIO_L_101 48% 39% 0.116 0.8931.21 1.09 7 330100%1
5VYP_PIO_K_101 48% 41% 0.121 0.8981.2 1 7 230100%1
4CQK_PIO_N_1048 83% 47% 0.071 0.9780.95 1 3 230100%1
5LO8_PIO_A_708 89% 40% 0.058 0.9811.19 1.06 6 210100%1
4KFM_PIO_A_401 45% 56% 0.078 0.8910.65 0.85 - -0066%1
6CS9_PIO_B_101 37% 40% 0.123 0.8491.24 1.02 7 260100%1
3SPH_PIO_A_400 33% 37% 0.122 0.8651.2 1.22 2 42085%1