Ligand validation:5VYP

GOL: GLYCEROL

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5VYP_GOL_T_102	53%	87%	0.098	0.884	0.37	0.27	-	-	2	0	100%	1
5VYP_GOL_W_103	47%	85%	0.106	0.871	0.38	0.31	-	-	1	0	100%	1
5VYP_GOL_S_102	36%	87%	0.144	0.881	0.38	0.28	-	-	0	0	100%	1
5VYP_GOL_C_102	36%	86%	0.159	0.906	0.37	0.3	-	-	0	0	100%	1
5VYP_GOL_I_102	36%	85%	0.102	0.809	0.38	0.31	-	-	0	0	100%	1
5VYP_GOL_W_102	22%	82%	0.165	0.839	0.45	0.3	-	-	2	0	100%	1
5VYP_GOL_P_102	18%	87%	0.131	0.753	0.37	0.28	-	-	0	0	100%	1
5VYP_GOL_M_102	14%	89%	0.154	0.756	0.36	0.24	-	-	1	0	100%	1
5VYP_GOL_U_106	11%	87%	0.21	0.828	0.39	0.25	-	-	0	0	100%	1
5VYP_GOL_Q_102	11%	86%	0.192	0.796	0.33	0.34	-	-	4	0	100%	1
5VYP_GOL_M_103	9%	85%	0.118	0.645	0.36	0.33	-	-	2	0	100%	1
5VYP_GOL_U_105	2%	86%	0.133	0.486	0.38	0.29	-	-	0	0	100%	1
2YGX_GOL_A_1398	100%	61%	0.006	1	0.38	0.93	-	-	2	0	100%	1
5WM2_GOL_A_603	100%	86%	0.011	0.999	0.53	0.16	-	-	0	0	100%	1
5MR6_GOL_B_602	100%	60%	0.012	0.999	0.4	0.92	-	-	0	0	100%	1
5W5T_GOL_D_506	100%	87%	0.014	0.998	0.38	0.26	-	-	0	0	100%	1
3MG3_GOL_A_324	100%	77%	0.015	0.997	0.24	0.58	-	-	0	0	100%	1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.