Ligand validation:5HKV

SPD: SPERMIDINE

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5HKV_SPD_X_3486	42%	86%	0.156	0.931	0.29	0.37	-	-	1	0	100%	1
5HKV_SPD_X_3485	31%	94%	0.186	0.927	0.19	0.26	-	-	1	0	100%	1
5HKV_SPD_X_3484	21%	90%	0.217	0.92	0.15	0.4	-	-	5	0	100%	1
5HKV_SPD_X_3489	15%	96%	0.241	0.915	0.13	0.25	-	-	10	0	100%	1
5HKV_SPD_X_3488	14%	85%	0.245	0.916	0.26	0.42	-	-	1	0	100%	1
5HKV_SPD_X_3482	4%	96%	0.33	0.918	0.18	0.22	-	-	2	0	100%	1
5HKV_SPD_Y_213	1%	92%	0.434	0.893	0.25	0.26	-	-	0	0	100%	1
5HKV_SPD_X_3487	1%	97%	0.416	0.808	0.11	0.23	-	-	0	0	100%	1
5HKV_SPD_X_3483	0%	83%	0.515	0.928	0.24	0.48	-	-	1	0	100%	1
3C6K_SPD_A_501	99%	52%	0.031	0.993	0.37	1.31	-	1	1	0	100%	1
7OYW_SPD_B_401	97%	56%	0.036	0.987	0.47	1.01	-	1	0	0	100%	0.5
7CI1_SPD_A_401	97%	48%	0.04	0.993	0.7	1.17	-	-	1	0	100%	1
9VYL_SPD_A_303	94%	15%	0.045	0.984	1.05	2.63	1	3	2	0	100%	1
3ICE_SPD_G_101	94%	65%	0.049	0.99	0.62	0.53	-	-	5	0	100%	1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.