DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)
DGD is a Ligand Of Interest in 4RVY designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
4RVY_DGD_c_517 | 8% | 55% | 0.4 | 0.893 | 0.88 | 0.86 | 2 | 2 | 0 | 0 | 94% | 0.9394 |
4RVY_DGD_c_516 | 2% | 52% | 0.546 | 0.87 | 0.88 | 0.97 | 3 | 2 | 0 | 0 | 94% | 0.9394 |
4RVY_DGD_C_517 | 2% | 55% | 0.534 | 0.826 | 0.88 | 0.86 | 2 | 2 | 0 | 0 | 94% | 0.9394 |
4RVY_DGD_c_518 | 2% | 56% | 0.531 | 0.807 | 0.79 | 0.9 | 3 | 3 | 0 | 0 | 94% | 0.9394 |
4RVY_DGD_C_516 | 2% | 52% | 0.582 | 0.85 | 0.87 | 0.98 | 2 | 2 | 0 | 0 | 94% | 0.9394 |
4RVY_DGD_C_518 | 1% | 56% | 0.637 | 0.753 | 0.79 | 0.9 | 3 | 3 | 0 | 0 | 94% | 0.9394 |
4RVY_DGD_h_102 | 0% | 52% | 0.903 | 0.816 | 0.92 | 0.94 | 3 | 4 | 0 | 0 | 94% | 0.9394 |
4RVY_DGD_H_102 | 0% | 52% | 1 | 0.854 | 0.92 | 0.94 | 3 | 4 | 0 | 0 | 94% | 0.9394 |
4RVY_DGD_d_410 | 0% | 48% | 0.762 | 0.531 | 0.99 | 1.02 | 4 | 6 | 0 | 0 | 94% | 0.9394 |
4RVY_DGD_D_410 | 0% | 48% | 1.244 | 0.48 | 0.99 | 1.03 | 4 | 6 | 0 | 0 | 94% | 0.9394 |
5V2C_DGD_C_516 | 95% | 43% | 0.067 | 0.983 | 0.89 | 1.29 | 5 | 10 | 0 | 0 | 94% | 0.9394 |
7YQ7_DGD_C_518 | 87% | 51% | 0.084 | 0.967 | 0.83 | 1.07 | 3 | 5 | 0 | 0 | 94% | 0.9394 |
8IR5_DGD_C_515 | 86% | 47% | 0.092 | 0.97 | 0.81 | 1.21 | 2 | 8 | 0 | 0 | 94% | 0.9394 |
8IRC_DGD_C_517 | 85% | 47% | 0.096 | 0.973 | 0.83 | 1.2 | 2 | 8 | 0 | 0 | 94% | 0.9394 |
5ZZN_DGD_c_517 | 85% | 45% | 0.09 | 0.966 | 1.05 | 1.06 | 3 | 5 | 0 | 0 | 94% | 0.9394 |
7RF1_DGD_c_519 | 85% | 34% | 0.093 | 0.968 | 1.16 | 1.45 | 6 | 11 | 0 | 0 | 94% | 0.9394 |