Ligand validation:4GDI

GOL: GLYCEROL

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
4GDI_GOL_C_509	68%	75%	0.091	0.944	0.34	0.53	-	-	0	0	100%	1
4GDI_GOL_A_510	65%	80%	0.105	0.954	0.32	0.46	-	-	0	0	100%	1
4GDI_GOL_A_512	63%	88%	0.098	0.935	0.44	0.2	-	-	1	0	100%	1
4GDI_GOL_F_514	61%	86%	0.106	0.937	0.34	0.33	-	-	0	0	100%	1
4GDI_GOL_A_511	60%	87%	0.111	0.94	0.45	0.21	-	-	1	0	100%	1
4GDI_GOL_F_513	56%	75%	0.116	0.929	0.35	0.51	-	-	0	0	100%	1
4GDI_GOL_F_515	45%	74%	0.122	0.888	0.35	0.54	-	-	0	0	100%	1
4GDI_GOL_E_512	40%	84%	0.141	0.895	0.48	0.25	-	-	0	0	100%	1
4GDI_GOL_E_513	34%	87%	0.146	0.875	0.35	0.29	-	-	0	0	100%	1
4GDI_GOL_F_512	27%	65%	0.181	0.896	0.55	0.62	-	-	0	0	100%	1
4GDI_GOL_B_512	21%	87%	0.164	0.83	0.31	0.34	-	-	0	0	100%	1
4GDI_GOL_B_511	14%	82%	0.186	0.812	0.31	0.43	-	-	0	0	100%	1
4GDI_GOL_E_511	11%	79%	0.184	0.775	0.34	0.46	-	-	1	0	100%	1
4GDI_GOL_D_508	9%	80%	0.201	0.788	0.37	0.42	-	-	1	0	100%	1
2YGX_GOL_A_1398	100%	61%	0.006	1	0.38	0.93	-	-	2	0	100%	1
5MR6_GOL_B_602	100%	60%	0.012	0.999	0.4	0.92	-	-	0	0	100%	1
5WM2_GOL_A_603	100%	86%	0.011	0.999	0.53	0.16	-	-	0	0	100%	1
5W5T_GOL_D_506	100%	87%	0.014	0.998	0.38	0.26	-	-	0	0	100%	1
3MG3_GOL_A_324	100%	77%	0.015	0.997	0.24	0.58	-	-	0	0	100%	1

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.