KDO: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid

KDO is a Ligand Of Interest in 3I6B designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3I6B_KDO_B_900Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3I6B_KDO_B_900Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
3I6B_KDO_B_900 0% 30% 0.538 0.5981.46 1.35 2 3270100%1
3I6B_KDO_D_900 0% 13% 0.591 0.6141.75 2.17 3 6270100%1
3DUR_KDO_A_303 100% 29% 0.021 0.9941.55 1.32 3 200100%1
3DUU_KDO_B_114 100% 43% 0.022 0.9931.01 1.21 1 100100%1
8FUX_KDO_A_405 97% 8% 0.054 0.9822.76 1.86 3 80094%0.9375
3K8D_KDO_D_1244 96% 10% 0.064 0.9832.6 1.77 6 60194%0.9375
3DUV_KDO_A_263 95% 24% 0.052 0.9550.95 2.11 1 401100%1