GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 2NZJ designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
2NZJ_GDP_A_1001 | 92% | 38% | 0.087 | 0.976 | 0.88 | 1.52 | - | 7 | 0 | 0 | 100% | 1 |
2NZJ_GDP_C_1003 | 91% | 46% | 0.083 | 0.97 | 0.82 | 1.24 | - | 5 | 1 | 0 | 100% | 1 |
2NZJ_GDP_D_1004 | 90% | 43% | 0.084 | 0.967 | 1.04 | 1.17 | 2 | 6 | 1 | 0 | 100% | 1 |
2NZJ_GDP_B_1002 | 89% | 39% | 0.093 | 0.973 | 0.8 | 1.57 | 1 | 8 | 0 | 0 | 100% | 1 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |
5UQW_GDP_A_1002 | 100% | 47% | 0.04 | 0.99 | 1.04 | 1.01 | 2 | 2 | 0 | 0 | 100% | 1 |
2PHN_GDP_A_2696 | 100% | 44% | 0.046 | 0.99 | 1.08 | 1.08 | 1 | 2 | 0 | 0 | 100% | 1 |