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The crystal structure of REM1 in complex with GDP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2G3Y pdb entries 2G3Y, 2GJS, 2DPX experimental model PDB 2GJS pdb entries 2G3Y, 2GJS, 2DPX experimental model PDB 2DPX pdb entries 2G3Y, 2GJS, 2DPX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.7 293 34 % (w/v) PEG3350, 0.26M NaCl, 0.1 M HEPES, pH 7.7, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.37 48.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.64 α = 90 b = 102.284 β = 90 c = 165.565 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-09-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 98.2 3.5 25510
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 99.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entries 2G3Y, 2GJS, 2DPX 2.5 29 24187 24187 1284 97.72 0.22728 0.22728 0.2246 0.2241 0.27988 0.2755 RANDOM 19.796
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -1.74 1.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.775 r_dihedral_angle_4_deg 16.082 r_dihedral_angle_3_deg 14.922 r_dihedral_angle_1_deg 6.662 r_scangle_it 1.887 r_angle_refined_deg 1.359 r_scbond_it 1.213 r_angle_other_deg 0.925 r_mcangle_it 0.88 r_mcbond_it 0.499
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.775 r_dihedral_angle_4_deg 16.082 r_dihedral_angle_3_deg 14.922 r_dihedral_angle_1_deg 6.662 r_scangle_it 1.887 r_angle_refined_deg 1.359 r_scbond_it 1.213 r_angle_other_deg 0.925 r_mcangle_it 0.88 r_mcbond_it 0.499 r_symmetry_vdw_other 0.237 r_nbd_refined 0.208 r_nbd_other 0.197 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.159 r_symmetry_vdw_refined 0.156 r_symmetry_hbond_refined 0.147 r_metal_ion_refined 0.121 r_mcbond_other 0.094 r_nbtor_other 0.085 r_chiral_restr 0.068 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4651 Nucleic Acid Atoms Solvent Atoms 16 Heterogen Atoms 118
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing