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Glutamate transporter homologue GltPh mutant P206R in Complex with L-Aspartate and Sodium Ions in Salipro
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6X15
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.57 r_dihedral_angle_3_deg 15.946 r_long_range_B_refined 13.192 r_long_range_B_other 13.192 r_scangle_other 6.917 r_mcangle_it 5.083 r_mcangle_other 5.082 r_dihedral_angle_1_deg 4.129 r_scbond_it 3.886 r_scbond_other 3.885
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.57 r_dihedral_angle_3_deg 15.946 r_long_range_B_refined 13.192 r_long_range_B_other 13.192 r_scangle_other 6.917 r_mcangle_it 5.083 r_mcangle_other 5.082 r_dihedral_angle_1_deg 4.129 r_scbond_it 3.886 r_scbond_other 3.885 r_mcbond_it 2.915 r_mcbond_other 2.914 r_angle_refined_deg 1.384 r_angle_other_deg 0.435 r_chiral_restr 0.053 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_gen_planes_other 0.001 r_bond_other_d r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Glutamate transporter homolog GltPh
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK III Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 249069 Reported Resolution (Å) 3.34 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C3
Map-Model Fitting and Refinement Id 1 (6x15) Refinement Space Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model JEOL CRYO ARM 200 Minimum Defocus (nm) 600 Maximum Defocus (nm) 1600 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model JEOL CRYOSPECPORTER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION SerialEM CTF CORRECTION CTFFIND 4.4 INITIAL EULER ASSIGNMENT cryoSPARC FINAL EULER ASSIGNMENT cryoSPARC CLASSIFICATION cryoSPARC RECONSTRUCTION cryoSPARC MODEL REFINEMENT REFMAC 5
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 743837