☰ Navigation Tabs
Structure of anti-EV71 human monoclonal antibody 16-2-8C Fab
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6Z3K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 25% (w/v) PEG 3350, 0.1 M Bis-Tris, pH 6.5, protein concentration: 26.4mg/ml
Crystal Properties Matthews coefficient Solvent content 2.21 44.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.013 α = 90 b = 80.394 β = 93.832 c = 57.572 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2018-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9282 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.14 46.908 99.1 1 11.5 6 153940
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.14 1.169 0.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.14 46.908 152349 7459 98.102 0.168 0.1661 0.1706 0.1938 0.1989 18.136
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.367 -0.358 -1.346 1.745
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 17.119 r_lrange_other 15.37 r_dihedral_angle_6_deg 14.323 r_dihedral_angle_3_deg 10.896 r_scangle_it 10.444 r_scangle_other 10.442 r_dihedral_angle_2_deg 9.533 r_mcangle_it 8.534 r_mcangle_other 8.533 r_scbond_it 7.354
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 17.119 r_lrange_other 15.37 r_dihedral_angle_6_deg 14.323 r_dihedral_angle_3_deg 10.896 r_scangle_it 10.444 r_scangle_other 10.442 r_dihedral_angle_2_deg 9.533 r_mcangle_it 8.534 r_mcangle_other 8.533 r_scbond_it 7.354 r_scbond_other 7.352 r_dihedral_angle_1_deg 6.935 r_mcbond_it 5.911 r_mcbond_other 5.909 r_rigid_bond_restr 3.697 r_angle_refined_deg 1.635 r_angle_other_deg 0.612 r_xyhbond_nbd_refined 0.235 r_nbd_refined 0.216 r_nbd_other 0.201 r_symmetry_nbd_other 0.2 r_symmetry_xyhbond_nbd_refined 0.177 r_symmetry_nbd_refined 0.176 r_nbtor_refined 0.162 r_chiral_restr 0.091 r_symmetry_nbtor_other 0.08 r_xyhbond_nbd_other 0.036 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3352 Nucleic Acid Atoms Solvent Atoms 565 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement MOLREP phasing