☰ Navigation Tabs
DARPin eGFP complex DP2 (2G156)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2QYJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277.15 50%pentaerythriol propoxylate
0.1 M Tris, pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.25 45.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.87 α = 90 b = 95.16 β = 115.76 c = 69.47 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2014-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 48.08 98.63 0.086 0.093 0.999 14.1 6.7 95818
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.59 1.63 0.836
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.59 48.08 91261 4677 98.73 0.17551 0.17363 0.1857 0.21167 0.2189 RANDOM 17.534
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.04 -0.47 3 -1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.538 r_long_range_B_refined 7.084 r_long_range_B_other 6.932 r_dihedral_angle_1_deg 6.739 r_dihedral_angle_2_deg 5.887 r_scangle_other 1.892 r_angle_refined_deg 1.53 r_scbond_it 1.345 r_scbond_other 1.345 r_mcangle_other 1.031
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.538 r_long_range_B_refined 7.084 r_long_range_B_other 6.932 r_dihedral_angle_1_deg 6.739 r_dihedral_angle_2_deg 5.887 r_scangle_other 1.892 r_angle_refined_deg 1.53 r_scbond_it 1.345 r_scbond_other 1.345 r_mcangle_other 1.031 r_mcangle_it 1.029 r_mcbond_it 0.629 r_mcbond_other 0.615 r_angle_other_deg 0.507 r_chiral_restr 0.07 r_bond_refined_d 0.009 r_gen_planes_refined 0.009 r_bond_other_d 0.005 r_gen_planes_other 0.002 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5505 Nucleic Acid Atoms Solvent Atoms 744 Heterogen Atoms 177
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing