9F23

DARPin eGFP complex DP2 (2G156)


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2QYJ 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP277.1550%pentaerythriol propoxylate 0.1 M Tris, pH 8.0
Crystal Properties
Matthews coefficientSolvent content
2.2545.22

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.87α = 90
b = 95.16β = 115.76
c = 69.47γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2014-09-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5948.0898.630.0860.0930.99914.16.795818
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.591.630.836

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.5948.0891261467798.730.175510.173630.21167RANDOM17.534
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.04-0.473-1.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.538
r_long_range_B_refined7.084
r_long_range_B_other6.932
r_dihedral_angle_1_deg6.739
r_dihedral_angle_2_deg5.887
r_scangle_other1.892
r_angle_refined_deg1.53
r_scbond_it1.345
r_scbond_other1.345
r_mcangle_other1.031
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.538
r_long_range_B_refined7.084
r_long_range_B_other6.932
r_dihedral_angle_1_deg6.739
r_dihedral_angle_2_deg5.887
r_scangle_other1.892
r_angle_refined_deg1.53
r_scbond_it1.345
r_scbond_other1.345
r_mcangle_other1.031
r_mcangle_it1.029
r_mcbond_it0.629
r_mcbond_other0.615
r_angle_other_deg0.507
r_chiral_restr0.07
r_bond_refined_d0.009
r_gen_planes_refined0.009
r_bond_other_d0.005
r_gen_planes_other0.002
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5505
Nucleic Acid Atoms
Solvent Atoms744
Heterogen Atoms177

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing