8RS9

p97 (VCP) double mutant - F266A F539A


ELECTRON MICROSCOPY

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5FTN 

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d17.8491
f_angle_d0.685
f_chiral_restr0.0446
f_plane_restr0.0041
f_bond_d0.0031
Sample
Tertiary complex of the hexameric p97 F266A F539A double mutant
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Detailspre-blotting incubation time of 20 secounds and blot for 3.5 seconds with -1 blot force
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles79612
Reported Resolution (Å)3.4
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Point SymmetryC6
Map-Model Fitting and Refinement
Id1 (5FTN)
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value111
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 (6k x 4k)
Electron Dose (electrons/Å**2)38
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)800
Maximum Defocus (nm)2000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS2.7
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONRELION3.1.2
IMAGE ACQUISITIONEPU
CTF CORRECTIONRELION3.1.2
MODEL FITTINGRELION3.1.2
MODEL REFINEMENTcryoSPARC3.2
INITIAL EULER ASSIGNMENTRELION3.1.2
FINAL EULER ASSIGNMENTRELION3.1.2
CLASSIFICATIONRELION3.1.2
RECONSTRUCTIONcryoSPARC3.2
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION3005242