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Structure of Sen1-ADP.BeF3-RNA complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB experimental model PDB 6I59 experimental model PDB 2XZO
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.309 f_angle_d 0.406 f_chiral_restr 0.038 f_plane_restr 0.002 f_bond_d 0.001
Sample Sen1-ADP.BeF3-RNA complex Sample Components Helicase SEN1 RNA
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 15633 Reported Resolution (Å) 4.4 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (6I59, 2XZO) Refinement Space Refinement Protocol OTHER Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 40.02
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION