8PKZ

NMR solution structure of PilF-GSPIIB in the c-di-GMP bound state

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	541 uM [U-13C; U-15N] PilF159-302, 812 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE II 600
2	3D HNCO	541 uM [U-13C; U-15N] PilF159-302, 812 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE II 600
3	3D HNCA	541 uM [U-13C; U-15N] PilF159-302, 812 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE II 600
4	3D HN(CA)CO	541 uM [U-13C; U-15N] PilF159-302, 812 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE II 600
5	3D HNCACB	541 uM [U-13C; U-15N] PilF159-302, 812 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE II 600
6	3D HBHA(CO)NH	541 uM [U-13C; U-15N] PilF159-302, 812 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE III HD 700
7	3D C(CO)NH	541 uM [U-13C; U-15N] PilF159-302, 812 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE III HD 700
8	3D H(CCO)NH	541 uM [U-13C; U-15N] PilF159-302, 812 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE III HD 700
9	3D HCCH-COSY	541 uM [U-13C; U-15N] PilF159-302, 812 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE II 600
10	3D HCCH-TOCSY	541 uM [U-13C; U-15N] PilF159-302, 812 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE NEO 600
11	3D HCCH-TOCSY	541 uM [U-13C; U-15N] PilF159-302, 812 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE NEO 600
12	2D 1H-13C HSQC aliphatic	541 uM [U-13C; U-15N] PilF159-302, 812 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE III 950
13	2D 1H-13C HSQC aromatic	541 uM [U-13C; U-15N] PilF159-302, 812 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE III HD 700
14	3D 1H-13C NOESY aliphatic	541 uM [U-13C; U-15N] PilF159-302, 812 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE III 950
15	3D 1H-13C NOESY aromatic	541 uM [U-13C; U-15N] PilF159-302, 812 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE III HD 700
16	2D 1H-15N HSQC	460 ug/uL [U-100% 15N] PilF159-302, 707 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE III HD 700
17	3D 1H-15N NOESY	460 ug/uL [U-100% 15N] PilF159-302, 707 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE III HD 700
18	2D 1H-13C HSQC aliphatic	522 uM [U-15N]-Leu/Val-13C-stereospecific PilF159-302, 627 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE III HD 700
19	2D 1H-13C HSQC aliphatic	545 uM [U-15N]-Leu/Val-13C PilF159-302, 818 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE II 600
20	3D 1H-13C NOESY aliphatic	545 uM [U-15N]-Leu/Val-13C PilF159-302, 818 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE II 600
21	2D 1H-31P-SFHMQC	545 uM [U-100% 15N] PilF159-302, 700 uM c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE II 600
22	2D HNN-COSY	940 uM [U-100% 15N] PilF159-302, 1122 uM [U-13C; U-15N] c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE II 600
23	2D 1H-13C HSQC aliphatic	420 uM PilF159-302, 420 uM [U-13C; U-15N] c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE NEO 900
24	2D 1H-13C HSQC aromatic	420 uM PilF159-302, 420 uM [U-13C; U-15N] c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE NEO 900
25	3D 1H-13C NOESY aliphatic	420 uM PilF159-302, 420 uM [U-13C; U-15N] c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE NEO 900
26	3D 1H-13C NOESY aromatic	420 uM PilF159-302, 420 uM [U-13C; U-15N] c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE NEO 900
27	2D 1H-15N HSQC NH2 only	420 uM PilF159-302, 420 uM [U-13C; U-15N] c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE NEO 600
28	3D 1H-15N NOESY NH2 only	420 uM PilF159-302, 420 uM [U-13C; U-15N] c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE NEO 600
29	2D 1H-13C HSQC aliphatic	420 uM PilF159-302, 420 uM [U-13C; U-15N] c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE II 600
30	2D 1H-13C HSQC aromatic	420 uM PilF159-302, 420 uM [U-13C; U-15N] c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE II 600
31	3D HCCH-COSY	420 uM PilF159-302, 420 uM [U-13C; U-15N] c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE II 600
32	2D HCN H1'-C1'-N9	420 uM PilF159-302, 420 uM [U-13C; U-15N] c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE II 600
33	2D HCN H8-C8-N9	420 uM PilF159-302, 420 uM [U-13C; U-15N] c-di-GMP	90% H2O/10% D2O	200 mM NaCl mM	5.8	ambient atm	318	Bruker AVANCE II 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE NEO	600
2	Bruker	AVANCE III HD	700
5	Bruker	AVANCE NEO	900
4	Bruker	AVANCE III	950
7	Bruker	AVANCE II	600

NMR Refinement
Method	Details	Software
distance geometry		CYANA
simulated annealing
torsion angle dynamics

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (target function)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	CARA		Keller and Wuthrich
2	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
4	peak picking	CARA		Keller and Wuthrich
5	peak picking	CcpNmr Analysis		CCPN
6	collection	TopSpin		Bruker Biospin
7	refinement	CYANA		Guntert, Mumenthaler and Wuthrich