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Human adenovirus type 53 fiber-knob protein complexed with sialic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 291 0.1 M PCTP buffer, 25 % w/v PEG 1500
Crystal Properties Matthews coefficient Solvent content 2.65 53.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.555 α = 90 b = 60.406 β = 99.88 c = 243.686 γ = 90
Symmetry Space Group P 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-12-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91188 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.77 92.17 98.7 0.168 0.195 0.097 0.685 6 3.8 258349 17.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.77 1.8 97.7 1.707 1.967 0.966 0.327 0.6 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.77 92.17 245379 12949 98.67 0.20937 0.20838 0.22826 0.1979 RANDOM 27.311
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 -0.7 0.62 -0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.565 r_dihedral_angle_4_deg 17.865 r_dihedral_angle_3_deg 15.65 r_dihedral_angle_1_deg 7.946 r_long_range_B_refined 7.067 r_long_range_B_other 7.018 r_angle_refined_deg 1.537 r_angle_other_deg 1.321 r_mcangle_it 1.268 r_mcangle_other 1.268
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.565 r_dihedral_angle_4_deg 17.865 r_dihedral_angle_3_deg 15.65 r_dihedral_angle_1_deg 7.946 r_long_range_B_refined 7.067 r_long_range_B_other 7.018 r_angle_refined_deg 1.537 r_angle_other_deg 1.321 r_mcangle_it 1.268 r_mcangle_other 1.268 r_scangle_other 1.134 r_scbond_it 0.739 r_scbond_other 0.739 r_mcbond_it 0.687 r_mcbond_other 0.687 r_chiral_restr 0.091 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17596 Nucleic Acid Atoms Solvent Atoms 1542 Heterogen Atoms 333
Software Software Software Name Purpose REFMAC refinement DIALS data scaling xia2 data reduction PHASER phasing