☰ Navigation Tabs
Backbone model of de novo-designed chlorophyll-binding nanocage O32-15
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 2.4879 f_angle_d 0.308 f_chiral_restr 0.029 f_plane_restr 0.0018 f_bond_d 0.0016
Sample Chlorophyll-binding nanocage O32-15 loaded with ZnPPaM
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 205014 Reported Resolution (Å) 6.5 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry O
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 49.99
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 300 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 64000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 3.0 PARTICLE SELECTION Topaz IMAGE ACQUISITION Leginon CTF CORRECTION cryoSPARC 3.0 MODEL FITTING UCSF Chimera 1.13 INITIAL EULER ASSIGNMENT cryoSPARC 3.0 FINAL EULER ASSIGNMENT cryoSPARC 3.0 RECONSTRUCTION cryoSPARC 3.0 MODEL REFINEMENT PHENIX 1.16 MODEL REFINEMENT Coot 0.8.9.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION Patch CTF estimation 359331