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ZBTB7A Zinc Finger Domain Bound to DNA Duplex Containing CAST sequence (#11)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7N5U
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 292 20% PEG3350,
0.2M Potassium chloride
Crystal Properties Matthews coefficient Solvent content 3.52 65.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 196.181 α = 90 b = 196.181 β = 90 c = 54.964 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-06-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.00000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.62 46.15 99.5 0.182 0.039 21.7 22.1 70633 62.02
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.62 2.71 100 0.706 0.398 1 19.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7N5U 2.62 46.15 1.34 70331 3492 98.82 0.2074 0.2058 0.204 0.2374 0.2376 105.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 28.3226 f_angle_d 0.629 f_chiral_restr 0.0388 f_bond_d 0.0036 f_plane_restr 0.0035
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2620 Nucleic Acid Atoms 2697 Solvent Atoms 76 Heterogen Atoms 32
Software Software Software Name Purpose PHENIX refinement SERGUI data collection HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing