7ZQO

d(CGCGCG)2 Z-DNA AT 7150 BARS (715 MPa)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE6.929810 mg of compound dissolved in 100 microLiter of 20 % MPD cacodylate buffer + 0.01 M MgCl2
Crystal Properties
Matthews coefficientSolvent content
1.6525.27

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 17.77α = 90
b = 30.87β = 90
c = 43.45γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298CCDADSC QUANTUM 315r2007-06-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM30A0.75003ESRFBM30A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4125.16569.90.1040.0660.9910.65.63464
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.411.4466.60.450.3010.885.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISFREE R-VALUE2ELG1.825.16517118369.980.2150.21210.283110.969
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.3660.1490.217
RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it3.316
r_lrange_other3.153
r_angle_refined_deg1.901
r_scangle_it1.428
r_scangle_other1.426
r_scbond_it1.006
r_scbond_other1.006
r_symmetry_xyhbond_nbd_refined0.325
r_angle_other_deg0.291
r_nbtor_refined0.27
RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it3.316
r_lrange_other3.153
r_angle_refined_deg1.901
r_scangle_it1.428
r_scangle_other1.426
r_scbond_it1.006
r_scbond_other1.006
r_symmetry_xyhbond_nbd_refined0.325
r_angle_other_deg0.291
r_nbtor_refined0.27
r_symmetry_nbd_other0.246
r_xyhbond_nbd_refined0.227
r_nbd_other0.214
r_symmetry_nbd_refined0.196
r_nbd_refined0.171
r_chiral_restr0.169
r_symmetry_nbtor_other0.095
r_gen_planes_refined0.017
r_bond_refined_d0.005
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms
Nucleic Acid Atoms240
Solvent Atoms48
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
FFTphasing