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Mutant L58F of recombinant bovine beta-lactoglobulin in complex with pramocaine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BSY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 2.2 M ammonium sulfate in 0.5 M Tris-HCl pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.56 51.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.722 α = 90 b = 53.722 β = 90 c = 112.254 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD AGILENT ATLAS CCD 2017-02-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE Agilent SuperNova 1.54056
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 13.84 99 0.042 0.052 0.999 9.6 2.6 11346
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.16 98.6 0.35 0.491 0.78 1.8 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1BSY 2.1 13.84 11325 1058 98.401 0.179 0.1747 0.183 0.2242 0.2277 39.695
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 0.09 0.18 -0.585
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.036 r_dihedral_angle_3_deg 15.511 r_dihedral_angle_1_deg 7.715 r_lrange_it 6.736 r_lrange_other 6.613 r_dihedral_angle_4_deg 6.611 r_scangle_other 4.838 r_scangle_it 4.831 r_mcangle_it 3.616 r_mcangle_other 3.614
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.036 r_dihedral_angle_3_deg 15.511 r_dihedral_angle_1_deg 7.715 r_lrange_it 6.736 r_lrange_other 6.613 r_dihedral_angle_4_deg 6.611 r_scangle_other 4.838 r_scangle_it 4.831 r_mcangle_it 3.616 r_mcangle_other 3.614 r_scbond_it 2.9 r_scbond_other 2.898 r_mcbond_it 2.307 r_mcbond_other 2.307 r_angle_refined_deg 1.664 r_angle_other_deg 1.239 r_nbd_other 0.229 r_symmetry_xyhbond_nbd_refined 0.203 r_nbd_refined 0.194 r_symmetry_nbd_other 0.192 r_xyhbond_nbd_refined 0.163 r_nbtor_refined 0.159 r_symmetry_nbtor_other 0.082 r_chiral_restr 0.081 r_symmetry_nbd_refined 0.048 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1215 Nucleic Acid Atoms Solvent Atoms 130 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement CrysalisPro data reduction Aimless data scaling PHASER phasing