7ZA0

Mutant L58F of recombinant bovine beta-lactoglobulin in complex with pramocaine


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52932.2 M ammonium sulfate in 0.5 M Tris-HCl pH 8.5
Crystal Properties
Matthews coefficientSolvent content
2.5651.95

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.722α = 90
b = 53.722β = 90
c = 112.254γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDAGILENT ATLAS CCD2017-02-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SEALED TUBEAgilent SuperNova1.54056

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.113.84990.0420.0520.9999.62.611346
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.1698.60.350.4910.781.81.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1BSY2.113.8411325105898.4010.1790.17470.224239.695
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.180.090.18-0.585
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.036
r_dihedral_angle_3_deg15.511
r_dihedral_angle_1_deg7.715
r_lrange_it6.736
r_lrange_other6.613
r_dihedral_angle_4_deg6.611
r_scangle_other4.838
r_scangle_it4.831
r_mcangle_it3.616
r_mcangle_other3.614
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.036
r_dihedral_angle_3_deg15.511
r_dihedral_angle_1_deg7.715
r_lrange_it6.736
r_lrange_other6.613
r_dihedral_angle_4_deg6.611
r_scangle_other4.838
r_scangle_it4.831
r_mcangle_it3.616
r_mcangle_other3.614
r_scbond_it2.9
r_scbond_other2.898
r_mcbond_it2.307
r_mcbond_other2.307
r_angle_refined_deg1.664
r_angle_other_deg1.239
r_nbd_other0.229
r_symmetry_xyhbond_nbd_refined0.203
r_nbd_refined0.194
r_symmetry_nbd_other0.192
r_xyhbond_nbd_refined0.163
r_nbtor_refined0.159
r_symmetry_nbtor_other0.082
r_chiral_restr0.081
r_symmetry_nbd_refined0.048
r_bond_refined_d0.01
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1215
Nucleic Acid Atoms
Solvent Atoms130
Heterogen Atoms26

Software

Software
Software NamePurpose
REFMACrefinement
CrysalisProdata reduction
Aimlessdata scaling
PHASERphasing