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Structure of the fluorescent protein NeonCyan0.95 at pH 5.6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5LTR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.1 M sodium acetate trihydrate (final pH 5.6), 24% PEG4000 (w/v), 0.2 M ammonium sulphate
Crystal Properties Matthews coefficient Solvent content 2.64 53.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.15 α = 90.19 b = 72.37 β = 90.04 c = 117.36 γ = 90.07
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-09-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.9793 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 48.9 86.7 0.078 0.997 9.7 3.5 152394 37.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 83.6 0.868 0.706 1.7 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5LTR 1.95 48.9 145259 7140 96.01 0.2113 0.2091 0.2537 0.272 RANDOM 39.711
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.02 -0.01 -0.03 0.01 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.177 r_dihedral_angle_4_deg 16.428 r_dihedral_angle_3_deg 14.77 r_dihedral_angle_1_deg 8.22 r_angle_refined_deg 1.711 r_angle_other_deg 1.292 r_chiral_restr 0.066 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.177 r_dihedral_angle_4_deg 16.428 r_dihedral_angle_3_deg 14.77 r_dihedral_angle_1_deg 8.22 r_angle_refined_deg 1.711 r_angle_other_deg 1.292 r_chiral_restr 0.066 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14177 Nucleic Acid Atoms Solvent Atoms 496 Heterogen Atoms 40
Software Software Software Name Purpose XDS data reduction XDS data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction