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Acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis TTE0866 delta100 mutant
Serial Crystallography (SX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7FBW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION, RECRYSTALLIZATION 8 293 20 mM Tris-HCl (pH8.0) 100 mM NaCl
Crystal Properties Matthews coefficient Solvent content 4.3 71.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.09 α = 90 b = 106.4 β = 90 c = 117.78 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2021-10-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL45XU 1.0 SPring-8 BL45XU
Serial Crystallography Sample delivery method Diffraction ID Description Sample Delivery Method 1 fixed target
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 39.91 99.9 0.17 0.993 14.3 11 14957
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.55 0.912 0.84
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7FBW 2.45 39.91 14956 722 99.906 0.193 0.1907 0.1974 0.2301 0.2327 38.227
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.066 -0.036 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.021 r_dihedral_angle_3_deg 21.027 r_dihedral_angle_4_deg 18.244 r_lrange_it 9.89 r_lrange_other 9.89 r_scangle_it 7.727 r_scangle_other 7.724 r_dihedral_angle_1_deg 7.524 r_mcangle_other 6.521 r_mcangle_it 6.507
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.021 r_dihedral_angle_3_deg 21.027 r_dihedral_angle_4_deg 18.244 r_lrange_it 9.89 r_lrange_other 9.89 r_scangle_it 7.727 r_scangle_other 7.724 r_dihedral_angle_1_deg 7.524 r_mcangle_other 6.521 r_mcangle_it 6.507 r_scbond_it 4.99 r_scbond_other 4.987 r_mcbond_it 4.284 r_mcbond_other 4.212 r_angle_refined_deg 1.868 r_angle_other_deg 1.344 r_nbd_refined 0.204 r_symmetry_nbd_other 0.181 r_nbtor_refined 0.173 r_xyhbond_nbd_refined 0.164 r_nbd_other 0.106 r_chiral_restr 0.105 r_symmetry_nbtor_other 0.085 r_symmetry_nbd_refined 0.085 r_bond_refined_d 0.012 r_symmetry_xyhbond_nbd_refined 0.012 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1488 Nucleic Acid Atoms Solvent Atoms 34 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing