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Cryo-EM structure of RIG-I in complex with p3dsRNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5F9H
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.827 r_long_range_B_refined 15.993 r_long_range_B_other 15.993 r_dihedral_angle_3_deg 13.854 r_dihedral_angle_1_deg 6.838 r_dihedral_angle_4_deg 6.74 r_mcangle_it 6.41 r_mcangle_other 6.409 r_scangle_other 4.417 r_mcbond_it 3.429
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.827 r_long_range_B_refined 15.993 r_long_range_B_other 15.993 r_dihedral_angle_3_deg 13.854 r_dihedral_angle_1_deg 6.838 r_dihedral_angle_4_deg 6.74 r_mcangle_it 6.41 r_mcangle_other 6.409 r_scangle_other 4.417 r_mcbond_it 3.429 r_mcbond_other 3.429 r_scbond_it 2.253 r_scbond_other 2.253 r_angle_other_deg 1.476 r_angle_refined_deg 1.053 r_chiral_restr 0.087 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Complex of RIG-I with p3dsRNA
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 613519 Reported Resolution (Å) 3.54 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (5F9H) Refinement Space REAL Refinement Protocol Refinement Target Overall B Value 150 Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 61
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1200 Maximum Defocus (nm) 2700 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE