7R5X

Tankyrase 2 in complex with an inhibitor (OUL211)


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5OWS 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP277.15100 mM Tris pH=8.5, 200mM Lithium Sulphate, 20% PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.6854.12

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 91.94α = 90
b = 96.99β = 90
c = 119.44γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 XE 16M2019-06-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.92023DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
125099.930.99815.27.936379
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0720.871

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5OWS2.05248.54236378181999.940.1910.18870.224435.436
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.162-0.4460.284
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.048
r_dihedral_angle_4_deg16.258
r_dihedral_angle_3_deg13.037
r_dihedral_angle_1_deg6.757
r_lrange_it6.191
r_lrange_other6.147
r_scangle_it4.297
r_scangle_other4.295
r_mcangle_it3.395
r_mcangle_other3.394
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.048
r_dihedral_angle_4_deg16.258
r_dihedral_angle_3_deg13.037
r_dihedral_angle_1_deg6.757
r_lrange_it6.191
r_lrange_other6.147
r_scangle_it4.297
r_scangle_other4.295
r_mcangle_it3.395
r_mcangle_other3.394
r_scbond_it2.678
r_scbond_other2.671
r_mcbond_it2.265
r_mcbond_other2.265
r_angle_refined_deg1.358
r_angle_other_deg1.241
r_nbd_other0.196
r_nbd_refined0.189
r_symmetry_nbd_other0.171
r_nbtor_refined0.161
r_symmetry_nbd_refined0.161
r_xyhbond_nbd_refined0.142
r_symmetry_xyhbond_nbd_refined0.114
r_symmetry_nbtor_other0.071
r_chiral_restr0.059
r_bond_refined_d0.006
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3354
Nucleic Acid Atoms
Solvent Atoms169
Heterogen Atoms54

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing