7R0P

CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT F254I COMPLEXED WITH FE, NAD+, AND ETHYLENE GLYCOL


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1RRM 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.5295.150.1M Sodium acetate pH 4.5, 15% w/v PEG 3350, 0.25M Sodium formate
Crystal Properties
Matthews coefficientSolvent content
2.2244.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.98α = 90
b = 86.161β = 90
c = 147.652γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 XE 16M2019-08-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.9763DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.642.771000.0360.99811.613.19836012.12
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.631000.3090.8542.510.77

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1RRM1.642.7798268479299.9880.1570.15610.177117.241
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.691-0.9681.659
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.852
r_dihedral_angle_4_deg20.73
r_dihedral_angle_3_deg11.749
r_dihedral_angle_1_deg6.368
r_lrange_it4.291
r_lrange_other4.154
r_scangle_it2.876
r_scangle_other2.876
r_scbond_it1.87
r_scbond_other1.87
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.852
r_dihedral_angle_4_deg20.73
r_dihedral_angle_3_deg11.749
r_dihedral_angle_1_deg6.368
r_lrange_it4.291
r_lrange_other4.154
r_scangle_it2.876
r_scangle_other2.876
r_scbond_it1.87
r_scbond_other1.87
r_mcangle_it1.629
r_mcangle_other1.629
r_angle_other_deg1.47
r_angle_refined_deg1.43
r_mcbond_it1.09
r_mcbond_other1.087
r_nbd_refined0.229
r_symmetry_xyhbond_nbd_refined0.175
r_symmetry_nbd_other0.172
r_symmetry_nbd_refined0.17
r_nbtor_refined0.163
r_nbd_other0.162
r_xyhbond_nbd_refined0.139
r_symmetry_xyhbond_nbd_other0.126
r_chiral_restr0.078
r_symmetry_nbtor_other0.076
r_ncsr_local_group_10.067
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5712
Nucleic Acid Atoms
Solvent Atoms555
Heterogen Atoms158

Software

Software
Software NamePurpose
REFMACrefinement
DIALSdata reduction
Aimlessdata scaling
REFMACphasing