7QZM

ATAD2 in complex with FragLite28

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3DAI

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.5	293	0.1M BisTris pH 6-7, 1.7-2.1M Ammonium sulphate

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 79.068	α = 90
b = 79.068	β = 90
c = 137.07	γ = 120

Symmetry
Space Group	P 65 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2019-11-23	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.911	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.45	68.54	100	0.058	0.059	0.013	0.999	31.7	38		45657

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.45	1.47			5.476	5.652	1.39	0.364		31.3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3DAI	1.45	68.54	45582	2317	99.971	0.209	0.2077	0.2423	34.054

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.171	-0.085		-0.171		0.555

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.891
r_dihedral_angle_4_deg	15.653
r_dihedral_angle_3_deg	15.192
r_lrange_it	9.132
r_lrange_other	9.129
r_scangle_it	7.128
r_scangle_other	7.124
r_scbond_it	5.02
r_scbond_other	5.016
r_dihedral_angle_1_deg	4.612
r_mcangle_it	4.24
r_mcangle_other	4.237
r_mcbond_it	3.029
r_mcbond_other	3.026
r_angle_refined_deg	2.092
r_angle_other_deg	1.508
r_nbd_refined	0.23
r_symmetry_nbd_refined	0.212
r_nbd_other	0.212
r_xyhbond_nbd_refined	0.202
r_symmetry_xyhbond_nbd_refined	0.196
r_symmetry_nbd_other	0.183
r_nbtor_refined	0.182
r_chiral_restr	0.099
r_symmetry_nbtor_other	0.082
r_xyhbond_nbd_other	0.066
r_bond_refined_d	0.015
r_gen_planes_refined	0.011
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1084
Nucleic Acid Atoms
Solvent Atoms	141
Heterogen Atoms	66

Software

Software
Software Name	Purpose
REFMAC	refinement
REFMAC	refinement
Aimless	data scaling
xia2	data reduction
xia2	data scaling
PHASER	phasing