7QUB

EV-A71-3Cpro in complex with inhibitor MG78


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4GHK 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7285.150.1 M Tris-HCl pH 7.0 + 34% PEG 3350 + 200mM NaCl
Crystal Properties
Matthews coefficientSolvent content
3.8467.97

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 122.336α = 90
b = 122.336β = 90
c = 122.336γ = 90
Symmetry
Space GroupP 4 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2021-06-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPETRA III, DESY BEAMLINE P111.0332PETRA III, DESYP11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.0743.2599.90.0430.99916.43819792
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.072.190.522

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE4ghk2.0743.251879799399.9490.1930.19150.218842.621
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.103
r_dihedral_angle_4_deg18.272
r_dihedral_angle_3_deg17.575
r_lrange_it9.497
r_lrange_other9.483
r_scangle_it7.968
r_scangle_other7.964
r_dihedral_angle_1_deg7.106
r_scbond_it5.736
r_scbond_other5.732
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.103
r_dihedral_angle_4_deg18.272
r_dihedral_angle_3_deg17.575
r_lrange_it9.497
r_lrange_other9.483
r_scangle_it7.968
r_scangle_other7.964
r_dihedral_angle_1_deg7.106
r_scbond_it5.736
r_scbond_other5.732
r_mcangle_other4.675
r_mcangle_it4.674
r_mcbond_it3.468
r_mcbond_other3.46
r_dihedral_angle_other_3_deg2.37
r_angle_refined_deg1.83
r_angle_other_deg1.336
r_nbd_refined0.231
r_symmetry_nbd_other0.188
r_nbtor_refined0.165
r_symmetry_nbd_refined0.165
r_nbd_other0.146
r_xyhbond_nbd_refined0.124
r_symmetry_nbtor_other0.085
r_chiral_restr0.079
r_symmetry_xyhbond_nbd_refined0.068
r_bond_refined_d0.012
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1413
Nucleic Acid Atoms
Solvent Atoms52
Heterogen Atoms40

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
REFMACphasing