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EV-A71-3Cpro in complex with inhibitor MG78
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4GHK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 285.15 0.1 M Tris-HCl pH 7.0 + 34% PEG 3350 + 200mM NaCl
Crystal Properties Matthews coefficient Solvent content 3.84 67.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.336 α = 90 b = 122.336 β = 90 c = 122.336 γ = 90
Symmetry Space Group P 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.0332 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.07 43.25 99.9 0.043 0.999 16.4 38 19792
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.07 2.19 0.522
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4ghk 2.07 43.25 18797 993 99.949 0.193 0.1915 0.1996 0.2188 0.2205 42.621
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.103 r_dihedral_angle_4_deg 18.272 r_dihedral_angle_3_deg 17.575 r_lrange_it 9.497 r_lrange_other 9.483 r_scangle_it 7.968 r_scangle_other 7.964 r_dihedral_angle_1_deg 7.106 r_scbond_it 5.736 r_scbond_other 5.732
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.103 r_dihedral_angle_4_deg 18.272 r_dihedral_angle_3_deg 17.575 r_lrange_it 9.497 r_lrange_other 9.483 r_scangle_it 7.968 r_scangle_other 7.964 r_dihedral_angle_1_deg 7.106 r_scbond_it 5.736 r_scbond_other 5.732 r_mcangle_other 4.675 r_mcangle_it 4.674 r_mcbond_it 3.468 r_mcbond_other 3.46 r_dihedral_angle_other_3_deg 2.37 r_angle_refined_deg 1.83 r_angle_other_deg 1.336 r_nbd_refined 0.231 r_symmetry_nbd_other 0.188 r_nbtor_refined 0.165 r_symmetry_nbd_refined 0.165 r_nbd_other 0.146 r_xyhbond_nbd_refined 0.124 r_symmetry_nbtor_other 0.085 r_chiral_restr 0.079 r_symmetry_xyhbond_nbd_refined 0.068 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1413 Nucleic Acid Atoms Solvent Atoms 52 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing