7QNJ

CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT F254I COMPLEXED WITH FE, NAD+, AND GLYCEROL


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1RRM 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.5295.1575.09mM Sodium acetate trihydrate, pH 4.5, 15%w/v PEG 3350, 225mM NAF
Crystal Properties
Matthews coefficientSolvent content
2.2445.09

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.139α = 90
b = 86.217β = 90
c = 148.474γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 X 16M2019-10-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.9763DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6629.4399.80.0330.99914.56.738889012.82
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.661.6997.10.3030.8472.55.85

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1RRM1.6629.42788804449299.8210.1560.15430.183318.441
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.825-0.9471.772
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.057
r_dihedral_angle_4_deg17.386
r_dihedral_angle_3_deg11.778
r_dihedral_angle_1_deg6.4
r_lrange_it4.519
r_lrange_other4.366
r_scangle_it2.409
r_scangle_other2.409
r_scbond_it1.503
r_scbond_other1.503
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.057
r_dihedral_angle_4_deg17.386
r_dihedral_angle_3_deg11.778
r_dihedral_angle_1_deg6.4
r_lrange_it4.519
r_lrange_other4.366
r_scangle_it2.409
r_scangle_other2.409
r_scbond_it1.503
r_scbond_other1.503
r_mcangle_it1.415
r_mcangle_other1.415
r_angle_other_deg1.37
r_angle_refined_deg1.28
r_mcbond_it0.888
r_mcbond_other0.887
r_nbd_refined0.209
r_xyhbond_nbd_other0.208
r_symmetry_xyhbond_nbd_refined0.184
r_symmetry_nbd_refined0.171
r_symmetry_nbd_other0.169
r_nbd_other0.169
r_nbtor_refined0.156
r_xyhbond_nbd_refined0.128
r_symmetry_nbtor_other0.074
r_chiral_restr0.067
r_bond_refined_d0.005
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5702
Nucleic Acid Atoms
Solvent Atoms610
Heterogen Atoms144

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
REFMACphasing