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OXA-48_E185A/R186A/R206A with carbamylated Lys73 in complex with chloride ions at neutral pH
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4S2P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 291 0.2M LiSO4, 21% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.82 56.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.186 α = 90 b = 146.186 β = 90 c = 54.887 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2020-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.979150 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 19.69 99.9 0.999 16.1 20.6 52999
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 0.726 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4S2P 1.9 19.69 52978 2657 99.855 0.179 0.1773 0.2112 0.2036 38.061
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.323 -1.161 -2.323 7.535
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.88 r_dihedral_angle_4_deg 22.021 r_dihedral_angle_3_deg 14.327 r_lrange_it 7.076 r_lrange_other 7.019 r_scangle_it 6.096 r_scangle_other 6.068 r_dihedral_angle_1_deg 5.954 r_scbond_it 4.012 r_mcangle_it 3.986
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.88 r_dihedral_angle_4_deg 22.021 r_dihedral_angle_3_deg 14.327 r_lrange_it 7.076 r_lrange_other 7.019 r_scangle_it 6.096 r_scangle_other 6.068 r_dihedral_angle_1_deg 5.954 r_scbond_it 4.012 r_mcangle_it 3.986 r_mcangle_other 3.986 r_scbond_other 3.965 r_mcbond_it 2.912 r_mcbond_other 2.897 r_angle_refined_deg 1.583 r_angle_other_deg 1.299 r_nbd_refined 0.204 r_xyhbond_nbd_refined 0.18 r_symmetry_nbd_other 0.167 r_nbtor_refined 0.159 r_nbd_other 0.153 r_symmetry_xyhbond_nbd_refined 0.111 r_symmetry_nbtor_other 0.077 r_chiral_restr 0.074 r_symmetry_nbd_refined 0.069 r_ncsr_local_group_1 0.069 r_symmetry_xyhbond_nbd_other 0.014 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3934 Nucleic Acid Atoms Solvent Atoms 257 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing