7OZY

FGFR2 kinase domain (residues 461-763) in complex with 38.

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2PVF

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	7.6	291	25% w/v PEG 3350, 0.1 M ammonium sulfate, 0.1 M HEPES

Crystal Properties
Matthews coefficient	Solvent content
2.73	54.98

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 113.839	α = 90
b = 113.839	β = 90
c = 117.408	γ = 90

Symmetry
Space Group	P 43 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M		2017-11-29	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE MASSIF-1	0.966	ESRF	MASSIF-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.28	80.54	99.9	0.141	0.152	0.056	0.989	6.6	7.1		35802

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.28	2.34			2.588	2.777	1.389	0.683

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2PVF	2.28	80.5	35216	1691	98.3	0.243	0.2403	0.2959	50.923

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.096			-1.096		2.192

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.054
r_dihedral_angle_4_deg	18.383
r_dihedral_angle_3_deg	14.416
r_lrange_other	8.089
r_lrange_it	8.088
r_dihedral_angle_1_deg	7.188
r_scangle_it	5.715
r_scangle_other	5.714
r_mcangle_it	5.565
r_mcangle_other	5.564
r_scbond_it	3.686
r_scbond_other	3.686
r_mcbond_it	3.675
r_mcbond_other	3.671
r_angle_refined_deg	1.43
r_angle_other_deg	1.186
r_symmetry_nbd_refined	0.267
r_nbd_other	0.194
r_nbd_refined	0.188
r_symmetry_nbd_other	0.177
r_symmetry_xyhbond_nbd_refined	0.164
r_nbtor_refined	0.159
r_xyhbond_nbd_refined	0.158
r_symmetry_nbtor_other	0.076
r_chiral_restr	0.063
r_bond_refined_d	0.006
r_gen_planes_refined	0.006
r_bond_other_d	0.001
r_gen_planes_other	0.001
r_symmetry_xyhbond_nbd_other

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4389
Nucleic Acid Atoms
Solvent Atoms	76
Heterogen Atoms	70

Software

Software
Software Name	Purpose
DIALS	data reduction
Aimless	data scaling
PHASER	phasing
REFMAC	refinement