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Structure of Chloroflexus islandicus LOV domain C85A variant (CisFbFP)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6RHF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.04 M KH2PO4, 16% w/v PEG 8000, 20% v/v glycerol
Crystal Properties Matthews coefficient Solvent content 2.46 50.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.606 α = 90 b = 62.541 β = 90 c = 64.157 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2020-09-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.9763 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 64.16 99.8 0.069 0.075 0.031 0.997 12.3 6.1 77945
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 99.4 0.931 1.026 0.426 0.776 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6RHF 1.2 44.78 73725 4048 99.61 0.1592 0.1577 0.1578 0.1846 0.1849 RANDOM 13.723
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.5 -0.27 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.091 r_dihedral_angle_4_deg 18.073 r_dihedral_angle_3_deg 11.31 r_dihedral_angle_1_deg 6.937 r_rigid_bond_restr 5.435 r_angle_refined_deg 2.052 r_angle_other_deg 1.572 r_chiral_restr 0.114 r_bond_refined_d 0.021 r_bond_other_d 0.018
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.091 r_dihedral_angle_4_deg 18.073 r_dihedral_angle_3_deg 11.31 r_dihedral_angle_1_deg 6.937 r_rigid_bond_restr 5.435 r_angle_refined_deg 2.052 r_angle_other_deg 1.572 r_chiral_restr 0.114 r_bond_refined_d 0.021 r_bond_other_d 0.018 r_gen_planes_refined 0.014 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1628 Nucleic Acid Atoms Solvent Atoms 271 Heterogen Atoms 131
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction MOLREP phasing