7OIS

mPI3Kd in complex with compound 7

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
other		Internal Model

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION		293	ethylene glycol per PEG 8000, carboxylic acids mix, buffer system 2

Crystal Properties
Matthews coefficient	Solvent content
2.08	40.98

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 141.9	α = 90
b = 64.96	β = 103.59
c = 116.14	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	RIGAKU SATURN A200		2014-12-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU FR-D	1.542

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.3	31.21	99.9	0.153	7.6	2.5		45929

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.3	2.38			0.345

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	Internal Model	2.3	31.024	45926	2316	99.859	0.213	0.2085	0.3062	43.984

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.805		-0.442	1.797		-2.139

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.193
r_dihedral_angle_4_deg	17.923
r_dihedral_angle_3_deg	16.396
r_lrange_it	16.076
r_lrange_other	15.188
r_dihedral_angle_1_deg	6.421
r_mcangle_it	4.31
r_mcangle_other	4.31
r_scangle_other	4.156
r_scangle_it	4.151
r_mcbond_it	2.815
r_mcbond_other	2.815
r_scbond_it	2.624
r_scbond_other	2.623
r_angle_refined_deg	1.356
r_angle_other_deg	1.13
r_metal_ion_refined	0.452
r_xyhbond_nbd_refined	0.369
r_symmetry_xyhbond_nbd_refined	0.316
r_nbd_refined	0.232
r_symmetry_nbd_refined	0.214
r_symmetry_nbd_other	0.2
r_nbd_other	0.185
r_nbtor_refined	0.159
r_symmetry_nbtor_other	0.076
r_symmetry_xyhbond_nbd_other	0.071
r_chiral_restr	0.058
r_bond_refined_d	0.005
r_gen_planes_refined	0.005
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6675
Nucleic Acid Atoms
Solvent Atoms	1532
Heterogen Atoms	40

Software

Software
Software Name	Purpose
REFMAC	refinement
iMOSFLM	data reduction
Aimless	data scaling
MOLREP	phasing