7OIL

mPI3Kd in complex with compound 58

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
other		Internal Model

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION		293	ethylene glycol per PEG 8000, carboxylic acids mix, buffer system 2,

Crystal Properties
Matthews coefficient	Solvent content
2.08	41

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 142.01	α = 90
b = 64.75	β = 103.39
c = 116.38	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	RIGAKU SATURN A200		2015-08-20	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU FR-E	1.542

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.95	31.13	99.2	0.139	6.2	3.4		75151

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.95	1.99			1.319

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	Internal Model	1.95	31.127	74626	3750	99.251	0.241	0.2389	0.2893	40.119

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.169		-0.191	2.197		-2.043

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.052
r_dihedral_angle_4_deg	17.458
r_dihedral_angle_3_deg	16.735
r_lrange_other	8.715
r_lrange_it	8.695
r_dihedral_angle_1_deg	6.791
r_scangle_other	6.346
r_scangle_it	6.317
r_mcangle_other	5.604
r_mcangle_it	5.602
r_scbond_other	4.056
r_scbond_it	4.037
r_mcbond_it	3.783
r_mcbond_other	3.775
r_angle_refined_deg	1.665
r_angle_other_deg	1.278
r_symmetry_nbd_refined	0.265
r_symmetry_xyhbond_nbd_refined	0.246
r_nbd_refined	0.222
r_xyhbond_nbd_refined	0.202
r_nbd_other	0.192
r_symmetry_nbd_other	0.186
r_nbtor_refined	0.169
r_symmetry_xyhbond_nbd_other	0.095
r_symmetry_nbtor_other	0.081
r_chiral_restr	0.08
r_bond_refined_d	0.01
r_gen_planes_refined	0.008
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6675
Nucleic Acid Atoms
Solvent Atoms	241
Heterogen Atoms	39

Software

Software
Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
Aimless	data scaling
MOLREP	phasing