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Crystal structure of the O2-tolerant MBH-P242C from Ralstonia eutropha in its reduced state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3RGW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 25% PEG 3350
5.5-6.5 pH Bis-Tris
Crystal Properties Matthews coefficient Solvent content 2.05 40.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.467 α = 90 b = 95.76 β = 90 c = 120.633 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL ADSC HF-4M 2013-06-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9762 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.62 75 99.4 1 7.6 5.1 110082
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.62 1.68 0.91
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3RGW 1.62 75 102895 5367 99.7 0.1635 0.1622 0.1708 0.188 0.1956 RANDOM 22.445
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.25 -1.21 0.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.767 r_sphericity_free 23.345 r_dihedral_angle_4_deg 15.725 r_dihedral_angle_3_deg 12.537 r_sphericity_bonded 6.821 r_dihedral_angle_1_deg 5.929 r_rigid_bond_restr 1.602 r_angle_refined_deg 1.225 r_angle_other_deg 0.852 r_chiral_restr 0.076
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.767 r_sphericity_free 23.345 r_dihedral_angle_4_deg 15.725 r_dihedral_angle_3_deg 12.537 r_sphericity_bonded 6.821 r_dihedral_angle_1_deg 5.929 r_rigid_bond_restr 1.602 r_angle_refined_deg 1.225 r_angle_other_deg 0.852 r_chiral_restr 0.076 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6788 Nucleic Acid Atoms Solvent Atoms 467 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction SCALA data scaling PHASER phasing