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GSTF1 from Alopecurus myosuroides
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6TJS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 Morpheus screen followed by screening
Crystal Properties Matthews coefficient Solvent content 3.24 62.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.896 α = 90 b = 112.896 β = 90 c = 101.669 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-07-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91587 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 35.7 100 0.069 26 26 394340
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 0.971
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6TJS 2.3 35.7 14895 715 99.839 0.195 0.1931 0.1905 0.24 0.237 67.932
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.761 -0.761 1.521
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.47 r_dihedral_angle_4_deg 20.69 r_dihedral_angle_3_deg 18.933 r_dihedral_angle_1_deg 7.496 r_lrange_it 7.149 r_lrange_other 7.128 r_scangle_other 4.804 r_scangle_it 4.802 r_mcangle_it 3.576 r_mcangle_other 3.576
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.47 r_dihedral_angle_4_deg 20.69 r_dihedral_angle_3_deg 18.933 r_dihedral_angle_1_deg 7.496 r_lrange_it 7.149 r_lrange_other 7.128 r_scangle_other 4.804 r_scangle_it 4.802 r_mcangle_it 3.576 r_mcangle_other 3.576 r_scbond_it 3.256 r_scbond_other 3.254 r_mcbond_it 2.506 r_mcbond_other 2.5 r_angle_refined_deg 1.97 r_angle_other_deg 1.422 r_nbd_refined 0.214 r_symmetry_nbd_refined 0.207 r_symmetry_nbd_other 0.19 r_nbtor_refined 0.182 r_nbd_other 0.169 r_xyhbond_nbd_refined 0.168 r_chiral_restr 0.099 r_symmetry_nbtor_other 0.087 r_symmetry_xyhbond_nbd_refined 0.028 r_bond_refined_d 0.014 r_gen_planes_refined 0.012 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1712 Nucleic Acid Atoms Solvent Atoms 51 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing