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RUVA COMPLEXED TO A HOLLIDAY JUNCTION.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BVS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 7.5 293 CRYSTALS GROWN UNDER OIL IN TERASAKI PLATES. DROPS FORMED FROM A 1:1 MIXTURE OF PROTEIN/DNA COMPLEX (10MG/ML COMPLEX, 20MM TRIS PH 7.5, 1MM EDTA, 0.1M NACL, 15% GLYCEROL) AND 1.4M NACITRATE, 0.1M TRIS PH 7.5., under oil
Crystal Properties Matthews coefficient Solvent content 3.35 63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.35 α = 90 b = 141.35 β = 90 c = 106.47 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1997-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX7.2 0.9366 SRS PX7.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.38 70.67 99.4 0.076 0.099 0.063 0.992 9.1 2.4 95144
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.38 2.42 92.9 0.511 0.688 0.456 0.617 1.7 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1bvs 2.378 53.06 95116 4597 99.4 0.2282 0.2271 0.221 0.2498 0.2422 RANDOM 55.33
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.9669 -0.9669 1.9339
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 19.43 t_omega_torsion 3.05 t_angle_deg 0.95 t_bond_d 0.008 t_dihedral_angle_d t_gen_planes t_it t_chiral_improper_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10228 Nucleic Acid Atoms 1220 Solvent Atoms 456 Heterogen Atoms 2
Software Software Software Name Purpose BUSTER refinement MOSFLM data reduction Aimless data scaling PHENIX phasing