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The structure of the SBP TarP_Csal in complex with ferulate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7NSW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 290 0.2 M MgCl2, 0.1 M Tris pH 8.5 and 20 % (w/v) PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.21 44.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.86 α = 101.68 b = 52.28 β = 98.59 c = 68.53 γ = 104.9
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97949 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 48.89 96.8 0.08 0.073 0.988 6.2 2 62516
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.8 95.4 0.687 0.62 0.47 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7NSW 1.75 47.124 62507 3047 96.822 0.194 0.1912 0.1985 0.2517 0.2574 33.081
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.778 -0.73 0.443 0.895 0.543 0.474
RMS Deviations Key Refinement Restraint Deviation r_scbond_it 32.707 r_scbond_other 32.706 r_dihedral_angle_2_deg 30.665 r_scangle_it 24.544 r_scangle_other 24.504 r_lrange_it 23.341 r_lrange_other 23.339 r_dihedral_angle_4_deg 16.312 r_mcbond_it 15.085 r_mcbond_other 15.069
RMS Deviations Key Refinement Restraint Deviation r_scbond_it 32.707 r_scbond_other 32.706 r_dihedral_angle_2_deg 30.665 r_scangle_it 24.544 r_scangle_other 24.504 r_lrange_it 23.341 r_lrange_other 23.339 r_dihedral_angle_4_deg 16.312 r_mcbond_it 15.085 r_mcbond_other 15.069 r_mcangle_it 14.338 r_mcangle_other 14.336 r_dihedral_angle_3_deg 14.045 r_dihedral_angle_1_deg 6.647 r_angle_refined_deg 1.458 r_angle_other_deg 1.328 r_symmetry_nbd_refined 0.205 r_nbd_refined 0.199 r_nbd_other 0.188 r_symmetry_nbd_other 0.176 r_nbtor_refined 0.16 r_xyhbond_nbd_refined 0.157 r_symmetry_xyhbond_nbd_refined 0.142 r_metal_ion_refined 0.101 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.073 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_symmetry_xyhbond_nbd_other 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5006 Nucleic Acid Atoms Solvent Atoms 472 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing