☰ Navigation Tabs
Drosophila PGRP-LB C160S mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OHT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2 M Sodium thiocyanate, 20%c w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.93 36.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.02 α = 71.822 b = 49.187 β = 79.001 c = 52.143 γ = 66.84
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2019-04-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.979 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 49.39 96.1 0.033 0.046 0.033 0.999 14.1 3.4 67209
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 0.26 0.368 0.26 0.875 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1OHT 1.4 49.39 67201 3360 96.044 0.168 0.1666 0.1745 0.1879 0.1954 17.292
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.225 0.172 0.476 0.718 -0.003 -0.437
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.152 r_dihedral_angle_4_deg 16.627 r_dihedral_angle_3_deg 10.488 r_dihedral_angle_1_deg 6.705 r_lrange_it 4.905 r_lrange_other 4.818 r_scangle_it 3.884 r_scangle_other 3.884 r_scbond_it 2.668 r_scbond_other 2.667
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.152 r_dihedral_angle_4_deg 16.627 r_dihedral_angle_3_deg 10.488 r_dihedral_angle_1_deg 6.705 r_lrange_it 4.905 r_lrange_other 4.818 r_scangle_it 3.884 r_scangle_other 3.884 r_scbond_it 2.668 r_scbond_other 2.667 r_mcangle_it 2.194 r_mcangle_other 2.193 r_angle_refined_deg 1.906 r_mcbond_other 1.581 r_mcbond_it 1.58 r_angle_other_deg 1.565 r_nbd_refined 0.217 r_symmetry_nbd_refined 0.187 r_symmetry_nbd_other 0.183 r_nbtor_refined 0.182 r_nbd_other 0.155 r_chiral_restr 0.11 r_symmetry_xyhbond_nbd_refined 0.106 r_xyhbond_nbd_refined 0.104 r_symmetry_nbtor_other 0.081 r_ncsr_local_group_1 0.072 r_bond_refined_d 0.014 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2583 Nucleic Acid Atoms Solvent Atoms 263 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement REFMAC refinement Aimless data reduction DIALS data processing Coot model building GDA data collection Aimless data scaling PHASER phasing