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Human CYP11B2 and human adrenodoxin in complex with fadrozole
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4FDH 4FDH, 3P1M experimental model PDB 3P1M 4FDH, 3P1M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 0.2 M lithium sulfate
0.1 M Tris hydrochloride, pH 8.5
30% PEG 4,000
Crystal Properties Matthews coefficient Solvent content 4.02 69.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 140.579 α = 90 b = 208.7 β = 114.073 c = 124.919 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2020-08-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.9786 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.933 50 100 0.073 0.991 11.06 7.7 69937 59.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.933 2.99 0.612 0.56 1.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4FDH, 3P1M 2.94 48.16 1.34 63799 2000 90.93 0.2107 0.2096 0.2115 0.2439 0.249 53.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 27.2353 f_angle_d 1.1606 f_chiral_restr 0.0637 f_bond_d 0.0123 f_plane_restr 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13474 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 192
Software Software Software Name Purpose PHENIX refinement Coot model building HKL-2000 data reduction HKL-2000 data scaling PHASER phasing