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Surface glycan-binding protein A from Bacteroides fluxus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 295 0.1 M tris pH8.1,
0.2 M magnesium chloride,
23 % (w/v) PEG8000
Crystal Properties Matthews coefficient Solvent content 2.27 45.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.855 α = 90 b = 116.505 β = 90 c = 139.895 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2020-11-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.9795 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 36.431 99.9 0.987 7.7 13.4 45565
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.84 1.88 0.793
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.84 36.431 45565 2369 99.847 0.206 0.2045 0.2046 0.2397 0.2397 39.088
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.462 -1.023 0.562
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.606 r_dihedral_angle_4_deg 14.527 r_dihedral_angle_3_deg 13.865 r_dihedral_angle_1_deg 7.093 r_lrange_it 6.877 r_lrange_other 6.849 r_scangle_it 5.471 r_scangle_other 5.471 r_mcangle_it 4.933 r_mcangle_other 4.933
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.606 r_dihedral_angle_4_deg 14.527 r_dihedral_angle_3_deg 13.865 r_dihedral_angle_1_deg 7.093 r_lrange_it 6.877 r_lrange_other 6.849 r_scangle_it 5.471 r_scangle_other 5.471 r_mcangle_it 4.933 r_mcangle_other 4.933 r_scbond_it 3.876 r_scbond_other 3.876 r_mcbond_it 3.697 r_mcbond_other 3.696 r_angle_other_deg 2.433 r_angle_refined_deg 1.64 r_symmetry_nbd_refined 0.246 r_nbd_other 0.226 r_nbd_refined 0.216 r_symmetry_nbd_other 0.213 r_nbtor_refined 0.175 r_symmetry_xyhbond_nbd_refined 0.175 r_xyhbond_nbd_refined 0.161 r_symmetry_xyhbond_nbd_other 0.111 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.076 r_bond_other_d 0.037 r_gen_planes_other 0.012 r_bond_refined_d 0.01 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3644 Nucleic Acid Atoms Solvent Atoms 241 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing